View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13363_low_7 (Length: 309)
Name: NF13363_low_7
Description: NF13363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13363_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 18053187 - 18052896
Alignment:
| Q |
1 |
caagagaaactaaattgaatcgggataaaattatgagagacgaaattgagtatttactcttagaaatataacagtaactataaaatcaaaatacaaagta |
100 |
Q |
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| T |
18053187 |
caagagaaactaaattgagtcgggataaaattatgagagacgaaattgagtatttactcttagaaatataacagtaactataaaatcaaaatacaaagta |
18053088 |
T |
|
| Q |
101 |
aaccatgttctgcttaaaacttggggaattgtactttggcaccacagttgtccaccagattagggcactgaatgaaatttgacccagaaatatccacgca |
200 |
Q |
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| T |
18053087 |
aaccatgttctgcttaaaacttggggaattgtactttggcaccacagttgtccaccagactagggcactgaatgaaatttgacccagaaatatccacgca |
18052988 |
T |
|
| Q |
201 |
catgtaaacttttaaaacctgatcgttacctgctgaatctctattacattccattcctgggagaaaccctgtagcttcttctataatgctta |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18052987 |
catgtaaacttttaaaacctgatcgttacctgctgaatctctattacattccattcctgggagaaaccctgtagcgtcttctataatgctta |
18052896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 18048115 - 18048000
Alignment:
| Q |
162 |
agggcactgaatgaaatttgacccagaaatatccacgcacatgtaaacttttaaaacctgatcgttacctgctgaatctctattacattccattcctggg |
261 |
Q |
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|||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| |||| ||| | ||| ||||||||||||| | ||||||||| |
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| T |
18048115 |
agggcactcaatgaaatttgacccagaagtatccacacacatgtaaacttttaaaagctgacttttaagtcctggatctctattacatactattcctggg |
18048016 |
T |
|
| Q |
262 |
agaaaccctgtagctt |
277 |
Q |
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| T |
18048015 |
agaaaccctgtagctt |
18048000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 261
Target Start/End: Complemental strand, 18029765 - 18029670
Alignment:
| Q |
166 |
cactgaatgaaatttgacccagaaatatccacgcacatgtaaacttttaaaacctgatcgttacctgctgaatctctattacattccattcctggg |
261 |
Q |
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|||| ||||||||||||||||||| | ||||| ||||||||||||| ||| || ||||| ||||||||||||||||||||| ||||||||| |
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| T |
18029765 |
cactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttggctgttacgtgctgaatctctattacattctattcctggg |
18029670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 18035792 - 18035694
Alignment:
| Q |
162 |
agggcactgaatgaaatttgacccagaaatatccacgcacatgtaaacttttaaaacctgatcgttacctgctgaatctctattacattccattcctgg |
260 |
Q |
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|||||||| |||||| |||||||||||||| ||| | ||||||||||||| ||| ||| ||| | |||||||||||||||||| || |||||||| |
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| T |
18035792 |
agggcactcaatgaattttgacccagaaatgtccgcacacatgtaaacttgataaagctggctgtttcgtgctgaatctctattacactctattcctgg |
18035694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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