View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13364_high_3 (Length: 455)
Name: NF13364_high_3
Description: NF13364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13364_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 928908 - 929174
Alignment:
| Q |
1 |
tgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaaatgaacaatgcacttaaaattacat |
100 |
Q |
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| T |
928908 |
tgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaaatgaacaatgcacttaaaa---cat |
929004 |
T |
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| Q |
101 |
tcaaatatataccc--gtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccacaaattcaacaacaatagaaatgaaat |
198 |
Q |
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| T |
929005 |
tcaaatatatacccctgtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccacaaattcaacaacaatagaaatgaaat |
929104 |
T |
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| Q |
199 |
tacaaattgagtacaacttcttcttaaattctaccataacctcctgactagcaagcaacggagaaacacatcat |
272 |
Q |
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| T |
929105 |
tacaaattgagtacaacttcttcttaaattctaccataacctcctgact----agcaacggagaaacacatcat |
929174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 929256 - 929340
Alignment:
| Q |
265 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgaataaga |
349 |
Q |
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| T |
929256 |
cacaacatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttctgaaacattaaagaaagtccgagtaaga |
929340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 344 - 423
Target Start/End: Original strand, 929362 - 929441
Alignment:
| Q |
344 |
ataagaaacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
423 |
Q |
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| T |
929362 |
ataaaaaacagtaagacgatgaaataagtcacaattaggaccttgtgaagtttttgtatgatatgaaaaatgtatcatga |
929441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 1201614 - 1201504
Alignment:
| Q |
322 |
tgaaacattaaagaaagtccgaataaga----aacagtaagacgatgaaataagtcacaataaggaccttgtgaagtttttgtatgatatgaaaaatgta |
417 |
Q |
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| T |
1201614 |
tgaaacattaaagataatctgaataagattaaaacagtaagacaatgcaataactcacaatcaggacctcgtgaagtttttgtatgatatgaaaaatgta |
1201515 |
T |
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| Q |
418 |
tcatgaatata |
428 |
Q |
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| ||| ||||| |
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| T |
1201514 |
ttatggatata |
1201504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 1201696 - 1201640
Alignment:
| Q |
265 |
cacatcatagagagaagccaaacattcgggcacaacagccgaacttagacggtcttc |
321 |
Q |
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| T |
1201696 |
cacaacatggagagaagccaaacattcgggcacaacagcagaacttagacgctcttc |
1201640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 1215280 - 1215212
Alignment:
| Q |
173 |
aaattcaacaacaatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctc |
241 |
Q |
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| T |
1215280 |
aaattcaacaacatgaggattgaaattatgaaatgaggacaacttctccttaaattcttccataacctc |
1215212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 8188529 - 8188573
Alignment:
| Q |
265 |
cacatcatagagagaagccaaacattcgggcacaacagccgaact |
309 |
Q |
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| T |
8188529 |
cacaacatggagagaagccaaacaatcgggcacaacagcagaact |
8188573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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