View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13364_high_5 (Length: 370)
Name: NF13364_high_5
Description: NF13364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13364_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 41864863 - 41864690
Alignment:
| Q |
4 |
ttttaaattttttattaatggcataaagtggaatcaaatgaagttgaatggcggggctaaggagcacaaaaaagagtgggtttgaataatttgtttacga |
103 |
Q |
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| T |
41864863 |
ttttaaaattgttattaatagcataaagtggaaacaaatgaagttgaatggcggggctaaggagcacaaaaaagagaggggctgaataatttgtttacga |
41864764 |
T |
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| Q |
104 |
agacacacaagcttggagccaccaacttgaaccatccccttttggaagcaatatagttgagttcatttattgag |
177 |
Q |
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| T |
41864763 |
agaaacacaagcttggaaccaccaacttgaaccatccccttttggaagcaatatagttgagttcatttattgag |
41864690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 216 - 361
Target Start/End: Complemental strand, 41864624 - 41864479
Alignment:
| Q |
216 |
ataaagaacccttcgtatgaatgttaactcttcatatctgtgtgctttctctttgcatcggtttgttttgttttctcaagaattttctccttacatgttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41864624 |
ataaagaacccttcgtatgaatgttaactcttcatatctgtgtgctttctgtttgtatcggtttgttttgttttctcaagaattttctccttacatgttt |
41864525 |
T |
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| Q |
316 |
tacattagtttattgtagcttttgtgataattcttcttcccctttg |
361 |
Q |
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| T |
41864524 |
tacattagttcattgtagcttttgtgataattcttcttcccctttg |
41864479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26451927 - 26451987
Alignment:
| Q |
1 |
ttgttttaaattttttattaatggcataaagtggaatcaaatgaagttgaatggcggggct |
61 |
Q |
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| T |
26451927 |
ttgttataaaattgttattaacagcataaagtggaatcaaatgaagttgaatggcggggct |
26451987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 13861404 - 13861358
Alignment:
| Q |
15 |
ttattaatggcataaagtggaatcaaatgaagttgaatggcggggct |
61 |
Q |
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||||||| ||||||||||||| ||||||||||||||||| |||||| |
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| T |
13861404 |
ttattaacagcataaagtggaaccaaatgaagttgaatggtggggct |
13861358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 52526700 - 52526654
Alignment:
| Q |
15 |
ttattaatggcataaagtggaatcaaatgaagttgaatggcggggct |
61 |
Q |
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||||||| ||||||||||||| ||||||||||||||||| |||||| |
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| T |
52526700 |
ttattaacagcataaagtggaaccaaatgaagttgaatggtggggct |
52526654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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