View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13364_low_1 (Length: 591)

Name: NF13364_low_1
Description: NF13364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13364_low_1
NF13364_low_1
[»] chr5 (22 HSPs)
chr5 (19-321)||(42532252-42532554)
chr5 (449-570)||(33937038-33937158)
chr5 (449-554)||(26506185-26506289)
chr5 (277-321)||(12349920-12349964)
chr5 (271-315)||(2117526-2117570)
chr5 (449-509)||(17344300-17344360)
chr5 (279-312)||(12661840-12661873)
chr5 (280-321)||(42699184-42699225)
chr5 (449-505)||(20883605-20883661)
chr5 (449-505)||(38739941-38739997)
chr5 (277-312)||(3141640-3141675)
chr5 (272-311)||(5130264-5130303)
chr5 (277-312)||(10232644-10232679)
chr5 (277-312)||(11306840-11306875)
chr5 (278-312)||(31284287-31284321)
chr5 (271-321)||(33567125-33567175)
chr5 (271-312)||(13613849-13613890)
chr5 (280-312)||(4434615-4434647)
chr5 (272-308)||(6515326-6515362)
chr5 (271-315)||(9403654-9403698)
chr5 (285-321)||(32536950-32536986)
chr5 (449-505)||(35049410-35049466)
[»] chr7 (22 HSPs)
chr7 (421-566)||(26153527-26153679)
chr7 (271-312)||(7807199-7807240)
chr7 (277-321)||(6353864-6353908)
chr7 (449-505)||(44225836-44225892)
chr7 (277-312)||(32154442-32154477)
chr7 (272-311)||(34348914-34348953)
chr7 (272-311)||(43657147-43657186)
chr7 (277-312)||(47424877-47424912)
chr7 (277-315)||(12142025-12142063)
chr7 (278-312)||(19426724-19426758)
chr7 (279-321)||(32933682-32933724)
chr7 (277-311)||(40717130-40717164)
chr7 (270-315)||(7077638-7077683)
chr7 (277-322)||(21839025-21839070)
chr7 (277-318)||(21858885-21858926)
chr7 (461-510)||(23943096-23943145)
chr7 (462-507)||(24503886-24503931)
chr7 (279-312)||(28597024-28597057)
chr7 (271-315)||(8792486-8792530)
chr7 (280-312)||(40842551-40842583)
chr7 (272-312)||(43260135-43260175)
chr7 (271-315)||(48866816-48866860)
[»] chr8 (17 HSPs)
chr8 (461-570)||(15893089-15893197)
chr8 (449-570)||(24619165-24619285)
chr8 (277-315)||(21273602-21273640)
chr8 (453-516)||(5075622-5075685)
chr8 (277-312)||(45101540-45101575)
chr8 (277-315)||(9046963-9047001)
chr8 (277-311)||(20473924-20473958)
chr8 (272-318)||(40413250-40413296)
chr8 (277-315)||(44672125-44672163)
chr8 (280-313)||(7678875-7678908)
chr8 (271-312)||(32175100-32175141)
chr8 (271-312)||(34474095-34474136)
chr8 (270-322)||(295680-295732)
chr8 (277-321)||(14708075-14708119)
chr8 (449-505)||(29671227-29671283)
chr8 (272-312)||(30925541-30925581)
chr8 (272-312)||(42543367-42543407)
[»] chr3 (17 HSPs)
chr3 (449-510)||(27934188-27934249)
chr3 (277-322)||(44695146-44695191)
chr3 (271-312)||(108574-108615)
chr3 (277-315)||(29706044-29706082)
chr3 (277-322)||(7231898-7231943)
chr3 (271-307)||(55344181-55344217)
chr3 (277-312)||(6126599-6126634)
chr3 (277-312)||(43169646-43169681)
chr3 (278-312)||(31249214-31249248)
chr3 (277-311)||(46953094-46953128)
chr3 (278-312)||(51406263-51406297)
chr3 (452-505)||(20514273-20514326)
chr3 (279-312)||(51650501-51650534)
chr3 (280-312)||(32687854-32687886)
chr3 (277-321)||(41957648-41957692)
chr3 (280-312)||(46003851-46003883)
chr3 (272-312)||(51464153-51464193)
[»] chr2 (17 HSPs)
chr2 (271-315)||(36133115-36133159)
chr2 (449-576)||(35004157-35004283)
chr2 (277-315)||(12600189-12600227)
chr2 (449-510)||(26224768-26224829)
chr2 (280-321)||(44287464-44287505)
chr2 (271-315)||(3091882-3091926)
chr2 (279-315)||(11164270-11164306)
chr2 (271-315)||(13711202-13711246)
chr2 (449-505)||(19379581-19379637)
chr2 (449-501)||(28758867-28758919)
chr2 (277-312)||(34138928-34138963)
chr2 (280-321)||(3838904-3838945)
chr2 (449-510)||(9827313-9827374)
chr2 (277-310)||(19913931-19913964)
chr2 (277-318)||(42283142-42283183)
chr2 (272-312)||(26321584-26321624)
chr2 (280-312)||(45515494-45515526)
[»] chr1 (22 HSPs)
chr1 (451-509)||(7318385-7318443)
chr1 (449-505)||(25818532-25818588)
chr1 (271-315)||(49453618-49453662)
chr1 (277-321)||(51703004-51703048)
chr1 (278-321)||(27687415-27687458)
chr1 (453-510)||(23943034-23943091)
chr1 (280-321)||(40612245-40612286)
chr1 (271-312)||(48872837-48872878)
chr1 (277-321)||(49425870-49425915)
chr1 (449-505)||(30703688-30703744)
chr1 (277-312)||(4638069-4638104)
chr1 (278-321)||(12034357-12034400)
chr1 (277-312)||(31480026-31480061)
chr1 (277-315)||(2362510-2362548)
chr1 (278-312)||(7503610-7503644)
chr1 (278-312)||(45272050-45272084)
chr1 (278-311)||(52020317-52020350)
chr1 (449-505)||(12067420-12067476)
chr1 (272-312)||(15061990-15062030)
chr1 (279-315)||(31290102-31290138)
chr1 (449-509)||(38810370-38810430)
chr1 (279-315)||(51571567-51571603)
[»] chr4 (20 HSPs)
chr4 (271-315)||(42915105-42915149)
chr4 (280-318)||(30042271-30042309)
chr4 (279-321)||(36408098-36408140)
chr4 (279-321)||(36413221-36413263)
chr4 (453-510)||(156735-156792)
chr4 (277-321)||(30973717-30973762)
chr4 (271-312)||(36792477-36792518)
chr4 (277-321)||(5234363-5234407)
chr4 (272-312)||(31240793-31240833)
chr4 (277-321)||(31275281-31275325)
chr4 (279-322)||(3286952-3286995)
chr4 (277-312)||(22257088-22257123)
chr4 (271-318)||(47998731-47998778)
chr4 (272-311)||(48372112-48372151)
chr4 (277-311)||(1580174-1580208)
chr4 (449-503)||(50334706-50334760)
chr4 (280-321)||(39440490-39440531)
chr4 (271-312)||(51039003-51039044)
chr4 (278-315)||(51389457-51389494)
chr4 (277-321)||(38952824-38952868)
[»] chr6 (7 HSPs)
chr6 (271-318)||(2241712-2241759)
chr6 (271-321)||(32253916-32253966)
chr6 (277-315)||(32853036-32853074)
chr6 (280-321)||(1156727-1156768)
chr6 (270-315)||(1897827-1897872)
chr6 (278-311)||(10628425-10628458)
chr6 (449-501)||(1031098-1031150)
[»] scaffold0015 (1 HSPs)
scaffold0015 (449-549)||(32931-33030)
[»] scaffold0115 (1 HSPs)
scaffold0115 (272-315)||(15076-15119)
[»] scaffold0036 (1 HSPs)
scaffold0036 (272-311)||(18148-18187)
[»] scaffold0508 (1 HSPs)
scaffold0508 (271-312)||(11422-11463)
[»] scaffold0204 (1 HSPs)
scaffold0204 (271-311)||(27485-27525)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 42532554 - 42532252
Alignment:
Q  19 atgactactgttgaatgaatagtgatgatatgaattatctagtctagtatgtcctggtgtgtagtggattgtagtttaggacgttttttgttcaaatgac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42532554 atgactactgttgaatgaatagtgatgatatgaattatctagtctagtatgtcctggtgtgtagtggattgtagtttaggacgttttttgttcaaatgac 42532455  T
Q  119 acatgaggttaaagtcaagtgcacagtaacacaggtgtagtgaaatttgagactacctaccattttatgtgggcatgcctatgaatgtttcataatctgt 218  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42532454 acatgaggttaaagtcaagtacacagtaacacaggtgtagtgaattttgagactacctaccattttatgtgggcatgcctatgaatgtttcataatctgt 42532355  T
Q  219 acaatccaagtaaaagtctacattatgaggcaagtatatggagcccatttccaaagactagtgatatttgaacaactatttcatacaacttttgtgataa 318  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||||| ||    
T  42532354 acaatggaagtaaaagtctacattatgaggcaagtatatggagcccatttcgaaagattagtgatatttgaacaactatttcatataatttttgtgacaa 42532255  T
Q  319 ttt 321  Q
    |||    
T  42532254 ttt 42532252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 449 - 570
Target Start/End: Complemental strand, 33937158 - 33937038
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtcaccttctctatcatccccccaagtccatgcatgacaca 548  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| |  ||||||||||||||  ||||| |||| | ||| |||||||| |  |||||||    
T  33937158 atgtaatcaatgtcactatcattttcgataagttgtggaaaatatatcgtcttccaaaagtcctcttctttatcct-ccctcaagtccacgtttgacaca 33937060  T
Q  549 tgtactcctacatgagatgttc 570  Q
    |||||| |||||||||||||||    
T  33937059 tgtactactacatgagatgttc 33937038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 449 - 554
Target Start/End: Original strand, 26506185 - 26506289
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtcaccttctctatcatccccccaagtccatgcatgacaca 548  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||   ||||| |||| | ||| ||||||||||| |||||||    
T  26506185 atgtaagcaacgtcgctatcatcttcgacaagttgtggaaaatacacggtctttcaaaagtgctcttctttatcct-ccctcaagtccatgcctgacaca 26506283  T
Q  549 tgtact 554  Q
    | ||||    
T  26506284 tttact 26506289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 12349964 - 12349920
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  12349964 tagtgatatttgaacaactatttgatacaacttttgtgataattt 12349920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 2117526 - 2117570
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||    
T  2117526 aaagagtagtgatatttgaacaactatttgatacaacttttgtga 2117570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 509
Target Start/End: Complemental strand, 17344360 - 17344300
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagt 509  Q
    |||||||||  |||| |||||||||||| ||||||||||||||| |||||||| |||||||    
T  17344360 atgtaatcagcgtcggtatcatcttcgacaagttgtggaaaatacacggtctttcaaaagt 17344300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 12661840 - 12661873
Alignment:
Q  279 gtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||||||||||||||||||||||    
T  12661840 gtgatatttgaacaactatttcatacaacttttg 12661873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 42699225 - 42699184
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  42699225 tgatatttgaacaactatttcatacaacttttataataattt 42699184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 20883605 - 20883661
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaa 505  Q
    |||||||||| ||| |||||||||| ||  |||||||||||||| ||||||||||||    
T  20883605 atgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttccaa 20883661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 38739997 - 38739941
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaa 505  Q
    |||||||||| ||| |||||||||| ||  |||||||||||||| ||||||||||||    
T  38739997 atgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttccaa 38739941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 3141675 - 3141640
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||| |||||||||||||||||    
T  3141675 tagtgatatttgaacaaccatttcatacaacttttg 3141640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 5130264 - 5130303
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaactttt 311  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  5130264 aagagtagtgatatttgaacaactatttcatacaattttt 5130303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 10232679 - 10232644
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10232679 tagtgatatttgaacaactattttatacaacttttg 10232644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 11306875 - 11306840
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11306875 tagtgatatttgaacaactatttgatacaacttttg 11306840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 31284287 - 31284321
Alignment:
Q  278 agtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||||| |||||||||||||||||    
T  31284287 agtgatatttgaacaaccatttcatacaacttttg 31284321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 33567125 - 33567175
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||| ||||||||| |||||||| |||| ||||||||||||||| |||||    
T  33567125 aaagagtagtgatatatgaacaaccatttgatacaacttttgtgacaattt 33567175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 13613849 - 13613890
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||| |||||||||||||||||  |||||||||||||||||    
T  13613849 aaagaatagtgatatttgaacaatcatttcatacaacttttg 13613890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 4434647 - 4434615
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||| ||||||||||||||||||    
T  4434647 tgatatttgaacaattatttcatacaacttttg 4434615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 6515326 - 6515362
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaact 308  Q
    |||| |||||||||||||||||| |||||||||||||    
T  6515326 aagagtagtgatatttgaacaaccatttcatacaact 6515362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 9403698 - 9403654
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||| ||||||||||| |||||| |||| |||||||||||||||    
T  9403698 aaagagtagtgatatttaaacaaccatttgatacaacttttgtga 9403654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 32536986 - 32536950
Alignment:
Q  285 tttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||||||| | |||||||||||||||||||    
T  32536986 tttgaacaactatttgagacaacttttgtgataattt 32536950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 35049410 - 35049466
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaa 505  Q
    |||||||||| ||| |||||||||| ||  ||||||||||||||  |||||||||||    
T  35049410 atgtaatcaacgtcactatcatctttgactagttgtggaaaatacgcggtcttccaa 35049466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 9e-50; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 421 - 566
Target Start/End: Complemental strand, 26153679 - 26153527
Alignment:
Q  421 ttgtcataaaatagttgtacaaatatc--------tatgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtcac 512  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  26153679 ttgtcataaaatagttgtacaaatatcatttctcatatgtaatcaatgtcgctatcatcttcgataagttgtggaaaatatacggtcttccaaaagtcat 26153580  T
Q  513 cttctctatcatccccccaagtccatgcatgacacatgtactcctacatgagat 566  Q
    ||||| |||| | |||||||||||||||||||||||||||||||||||||||||    
T  26153579 cttctttatcct-cccccaagtccatgcatgacacatgtactcctacatgagat 26153527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 7807240 - 7807199
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  7807240 aaagagtagtgatatttgaacaaccatttcatacaacttttg 7807199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 6353908 - 6353864
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||    
T  6353908 tagtgatatttgaaaaactatttgatacaacttttgtgacaattt 6353864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 44225892 - 44225836
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaa 505  Q
    |||||||||| ||| |||||||||| ||  |||||||||||||| ||||||||||||    
T  44225892 atgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttccaa 44225836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 32154442 - 32154477
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||| |||||||||||||||||    
T  32154442 tagtgatatttgaacaaccatttcatacaacttttg 32154477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 34348914 - 34348953
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaactttt 311  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  34348914 aagagtagtgatatttgaacatctatttcatacaactttt 34348953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 43657186 - 43657147
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaactttt 311  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  43657186 aagagtagtgatatttgaacaaccatttcatacaactttt 43657147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 47424877 - 47424912
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||| |||||||||||||||||    
T  47424877 tagtgatatttgaacaaccatttcatacaacttttg 47424912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 12142063 - 12142025
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  12142063 tagtgatatttgaacaaccatttgatacaacttttgtga 12142025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 19426758 - 19426724
Alignment:
Q  278 agtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||||| |||||||||||||||||    
T  19426758 agtgatatttgaacaaccatttcatacaacttttg 19426724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 32933724 - 32933682
Alignment:
Q  279 gtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||    
T  32933724 gtgatatttgaacaattatttgatacaacttttgtgacaattt 32933682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 40717130 - 40717164
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaactttt 311  Q
    |||||||||||||||||| ||||||||||||||||    
T  40717130 tagtgatatttgaacaaccatttcatacaactttt 40717164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 7077638 - 7077683
Alignment:
Q  270 caaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    |||||| | ||||||||||||||||||||| | |||||||||||||    
T  7077638 caaagaattgtgatatttgaacaactattttaaacaacttttgtga 7077683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 21839025 - 21839070
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattta 322  Q
    ||||||||||||||||||||||| |||||| |||||| | ||||||    
T  21839025 tagtgatatttgaacaactatttgatacaatttttgtaacaattta 21839070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 21858926 - 21858885
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataa 318  Q
    |||||||||||||||||| |||| | ||||||||||||||||    
T  21858926 tagtgatatttgaacaaccattttaaacaacttttgtgataa 21858885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 23943145 - 23943096
Alignment:
Q  461 tcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtc 510  Q
    ||||||||||||| || |||||||||| |||| ||||||||||| |||||    
T  23943145 tcgctatcatctttgagaagttgtggataatacacggtcttccagaagtc 23943096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 507
Target Start/End: Complemental strand, 24503931 - 24503886
Alignment:
Q  462 cgctatcatcttcgataagttgtggaaaataaacggtcttccaaaa 507  Q
    |||||||||||| || ||||||||||||||| |||||||| |||||    
T  24503931 cgctatcatctttgagaagttgtggaaaatatacggtctttcaaaa 24503886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 28597057 - 28597024
Alignment:
Q  279 gtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||| |||||||||||||||||    
T  28597057 gtgatatttgaacaaccatttcatacaacttttg 28597024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 8792486 - 8792530
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||| || ||||||||||||||| |||| |||||||||||||||    
T  8792486 aaagagtaatgatatttgaacaaccatttgatacaacttttgtga 8792530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 40842583 - 40842551
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||| |||||||||||||||||    
T  40842583 tgatatttgaacaaccatttcatacaacttttg 40842551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 43260175 - 43260135
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  43260175 aagagtagtcatatttgaacaaccatttcatacaacttttg 43260135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 48866816 - 48866860
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||| |||||||||||||||| |||||| | |||||||||||||    
T  48866816 aaagagtagtgatatttgaacatctatttgaaacaacttttgtga 48866860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 461 - 570
Target Start/End: Original strand, 15893089 - 15893197
Alignment:
Q  461 tcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtcaccttctctatcatccccccaagtccatgcatgacacatgtactcctaca 560  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||  |||| | |||||||||||| ||||| | ||||||||  ||||    
T  15893089 tcgctatcatctttgacaagttgtggaaaatacacggtcttccaaaagtcatcttccttatcct-cccccaagtccacgcatggcgcatgtactattaca 15893187  T
Q  561 tgagatgttc 570  Q
    ||||||||||    
T  15893188 tgagatgttc 15893197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 570
Target Start/End: Original strand, 24619165 - 24619285
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtcaccttctctatcatccccccaagtccatgcatgacaca 548  Q
    |||||||||| ||| |||||||||| || |||||||||| |||| ||| |||| ||||||||  ||||  |||| ||||| ||||||||||||||||||     
T  24619165 atgtaatcaacgtcactatcatctttgaaaagttgtggataatacacgatctttcaaaagtcctcttccttatcctcccc-caagtccatgcatgacacc 24619263  T
Q  549 tgtactcctacatgagatgttc 570  Q
    |||||    |||||||||||||    
T  24619264 tgtacaatgacatgagatgttc 24619285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 21273602 - 21273640
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21273602 tagtgatatttgaacaactatttcatacaacttttgtga 21273640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 516
Target Start/End: Complemental strand, 5075685 - 5075622
Alignment:
Q  453 aatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtcaccttc 516  Q
    |||||| |||||||||||||| || |||||||||| |||| ||||| ||||| |||||| ||||    
T  5075685 aatcaacgtcgctatcatctttgagaagttgtggataatacacggttttccagaagtcatcttc 5075622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 45101575 - 45101540
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||| |||||||||||||||||    
T  45101575 tagtgatatttgaacaaccatttcatacaacttttg 45101540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 9046963 - 9047001
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  9046963 tagtgatatttgaacaactatttgatacaatttttgtga 9047001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 20473958 - 20473924
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaactttt 311  Q
    ||||||||||||||||||||||||||| |||||||    
T  20473958 tagtgatatttgaacaactatttcatataactttt 20473924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 40413250 - 40413296
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaacttttgtgataa 318  Q
    |||| |||||||||||||||||| |||| ||||||||||| ||||||    
T  40413250 aagagtagtgatatttgaacaaccatttgatacaacttttatgataa 40413296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 44672125 - 44672163
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  44672125 tagtgatatttgaacaattatttgatacaacttttgtga 44672163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 313
Target Start/End: Complemental strand, 7678908 - 7678875
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttgt 313  Q
    |||||||||||||||||||| |||||||||||||    
T  7678908 tgatatttgaacaactatttgatacaacttttgt 7678875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 32175141 - 32175100
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||| || ||||||||||||||| |||||||||||||||||    
T  32175141 aaagagtaatgatatttgaacaaccatttcatacaacttttg 32175100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 34474136 - 34474095
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||| || ||||||||||||||| |||||||||||||||||    
T  34474136 aaagagtaatgatatttgaacaaccatttcatacaacttttg 34474095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 295732 - 295680
Alignment:
Q  270 caaagactagtgatatttgaacaactatttcatacaacttttgtgataattta 322  Q
    |||||| ||||| ||||||||||||||||| | | ||||||||||| ||||||    
T  295732 caaagagtagtgttatttgaacaactatttgagataacttttgtgacaattta 295680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 14708119 - 14708075
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    |||||||||||||| |||||||| | | |||||||||||||||||    
T  14708119 tagtgatatttgaaaaactatttgaaataacttttgtgataattt 14708075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 29671283 - 29671227
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaa 505  Q
    |||||||| |||| || |||||| | ||||| |||||||||||| ||||||||||||    
T  29671283 atgtaatcgatgttgccatcatcatggataacttgtggaaaatacacggtcttccaa 29671227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 30925541 - 30925581
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||| |||||||||||||||||| |||| ||||||||||||    
T  30925541 aagagtagtgatatttgaacaaccattttatacaacttttg 30925581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 42543367 - 42543407
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||| |||||||| ||||||||| |||||||||||||||||    
T  42543367 aagagtagtgataattgaacaaccatttcatacaacttttg 42543407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 510
Target Start/End: Complemental strand, 27934249 - 27934188
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtc 510  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  27934249 atgtaagcaacgtcgctatcatcttcgacaagttgtggaaaatatatggtcttccaaaagtc 27934188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 44695191 - 44695146
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattta 322  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  44695191 tagtgatatttgaacaaccatttcatacaacttttgtgataattta 44695146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 108615 - 108574
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  108615 aaagagtagtgatatttgaacaactatttcatacaacttttg 108574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 29706082 - 29706044
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  29706082 tagtgatatttgaacaactatttgatacaacttttgtga 29706044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 7231898 - 7231943
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattta 322  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||    
T  7231898 tagtgatatttgaacaaccatttgatacaacttttgtgacaattta 7231943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 55344181 - 55344217
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaac 307  Q
    ||||| |||||||||||||||||||||||||||||||    
T  55344181 aaagagtagtgatatttgaacaactatttcatacaac 55344217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 6126634 - 6126599
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||| |||||||||||||||||    
T  6126634 tagtgatatttgaacaaccatttcatacaacttttg 6126599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 43169646 - 43169681
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||| |||||||||||||||||    
T  43169646 tagtgatatttgaacaaccatttcatacaacttttg 43169681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 31249214 - 31249248
Alignment:
Q  278 agtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||||| |||||||||||||||||    
T  31249214 agtgatatttgaacaaccatttcatacaacttttg 31249248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 46953128 - 46953094
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaactttt 311  Q
    ||||||||||||||||||||||| |||||||||||    
T  46953128 tagtgatatttgaacaactatttgatacaactttt 46953094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 51406263 - 51406297
Alignment:
Q  278 agtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||||||||||| ||||||||    
T  51406263 agtgatatttgaacaactatttcatataacttttg 51406297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 505
Target Start/End: Original strand, 20514273 - 20514326
Alignment:
Q  452 taatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaa 505  Q
    ||||||| |||||||||||||| ||  |||||||||||| | ||||||||||||    
T  20514273 taatcaacgtcgctatcatctttgactagttgtggaaaaaacacggtcttccaa 20514326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 51650534 - 51650501
Alignment:
Q  279 gtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||| |||||||||||||||||    
T  51650534 gtgatatttgaacaaccatttcatacaacttttg 51650501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 32687854 - 32687886
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||||| ||||||||||||    
T  32687854 tgatatttgaacaactatttgatacaacttttg 32687886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 41957692 - 41957648
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||| |||||| |||| | |||||||||||||||||||    
T  41957692 tagtgatatttaaacaaccattttaaacaacttttgtgataattt 41957648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 46003883 - 46003851
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||| |||||||||||||||||    
T  46003883 tgatatttgaacaaccatttcatacaacttttg 46003851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 51464153 - 51464193
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||| |||||||||||||||||| |||| ||||||||||||    
T  51464153 aagagtagtgatatttgaacaaccattttatacaacttttg 51464193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 36133159 - 36133115
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  36133159 aaagagtagtgatatttgaacaactatttcatacaacttttgtga 36133115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 576
Target Start/End: Complemental strand, 35004283 - 35004157
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtcaccttctctatcatccccccaagtccatgcatgacaca 548  Q
    |||||||||| ||||||||||| || || |||||||| |||||| |||||||||||||||||  ||||  |||| | ||||||||||||  | || |||     
T  35004283 atgtaatcaacgtcgctatcatatttgacaagttgtgaaaaatacacggtcttccaaaagtcttcttccttatcct-cccccaagtccactcctggcact 35004185  T
Q  549 tgtactcctacatgagatgttcgatgat 576  Q
    |||||| |||||| | |||||| |||||    
T  35004184 tgtactactacataacatgttctatgat 35004157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 12600227 - 12600189
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12600227 tagtgatatttgaacaactatttcatacaacttttgtga 12600189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 449 - 510
Target Start/End: Original strand, 26224768 - 26224829
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtc 510  Q
    |||||||||| ||| ||||||||||||| ||||| | ||||||| | |||||||||||||||    
T  26224768 atgtaatcaacgtcactatcatcttcgacaagttctagaaaatacaaggtcttccaaaagtc 26224829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 44287505 - 44287464
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  44287505 tgatatttgaacaactattttttacaacttttgtgataattt 44287464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 3091926 - 3091882
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||    
T  3091926 aaagagtagtgatatttgaacaattatttgatacaacttttgtga 3091882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 11164270 - 11164306
Alignment:
Q  279 gtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||||||||||||||||||| |||||||||||||||    
T  11164270 gtgatatttgaacaactatttgatacaacttttgtga 11164306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 13711246 - 13711202
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||    
T  13711246 aaagagtagtgatatttgaacaactattttgtacaacttttgtga 13711202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 19379637 - 19379581
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaa 505  Q
    |||||||||| ||| |||||||||| ||  |||||||||||||| ||||||||||||    
T  19379637 atgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttccaa 19379581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 28758919 - 28758867
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtctt 501  Q
    |||||||||| |||||||||||||| || |||||||||| |||| ||||||||    
T  28758919 atgtaatcaacgtcgctatcatctttgagaagttgtggataatacacggtctt 28758867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 34138928 - 34138963
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||| |||||||||||||||||    
T  34138928 tagtgatatttgaacaaccatttcatacaacttttg 34138963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 3838945 - 3838904
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    |||||||||||||| |||||  ||||||||||||||||||||    
T  3838945 tgatatttgaacaattattttttacaacttttgtgataattt 3838904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 510
Target Start/End: Original strand, 9827313 - 9827374
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtc 510  Q
    |||||||||| |||||||||||||| || ||||||| || |||| || |||||||| |||||    
T  9827313 atgtaatcaacgtcgctatcatctttgagaagttgttgataatacacagtcttccagaagtc 9827374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 19913964 - 19913931
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttt 310  Q
    |||||||||||||||||| |||||||||||||||    
T  19913964 tagtgatatttgaacaaccatttcatacaacttt 19913931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 42283142 - 42283183
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataa 318  Q
    |||||||||||||||||| ||||||| ||| |||||||||||    
T  42283142 tagtgatatttgaacaaccatttcattcaatttttgtgataa 42283183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 26321584 - 26321624
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||| |||||||||||||||||  |||||||||||||||||    
T  26321584 aagagtagtgatatttgaacaatcatttcatacaacttttg 26321624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 45515494 - 45515526
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||| |||||||||||||||||    
T  45515494 tgatatttgaacaaccatttcatacaacttttg 45515526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 451 - 509
Target Start/End: Original strand, 7318385 - 7318443
Alignment:
Q  451 gtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagt 509  Q
    |||| ||| ||||||||||||||||| ||||||||||||||| || |||||||||||||    
T  7318385 gtaagcaacgtcgctatcatcttcgagaagttgtggaaaatacacagtcttccaaaagt 7318443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 25818588 - 25818532
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaa 505  Q
    |||||||||| |||||||||||||| ||  |||||||||||||| ||||||||||||    
T  25818588 atgtaatcaacgtcgctatcatctttgactagttgtggaaaatacacggtcttccaa 25818532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 49453662 - 49453618
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||    
T  49453662 aaagagtagtgatatttgaacaactatttgatacaacttttgtga 49453618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 51703004 - 51703048
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    |||||||||||||||||| |||||| |||||||||||||||||||    
T  51703004 tagtgatatttgaacaaccatttcagacaacttttgtgataattt 51703048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 27687415 - 27687458
Alignment:
Q  278 agtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    |||||||||||||||||| ||| |||||||||||||||||||||    
T  27687415 agtgatatttgaacaactgtttgatacaacttttgtgataattt 27687458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 510
Target Start/End: Complemental strand, 23943091 - 23943034
Alignment:
Q  453 aatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtc 510  Q
    |||||| |||||||||||||| || |||||||||| |||| ||||||||||| |||||    
T  23943091 aatcaacgtcgctatcatctttgagaagttgtggataatacacggtcttccagaagtc 23943034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 40612286 - 40612245
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  40612286 tgatatttgaacaactatttcatacaatttttatgataattt 40612245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 48872837 - 48872878
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  48872837 aaagagtagtgatatttgaacaaccatttcatacaacttttg 48872878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 49425915 - 49425870
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaactttt-gtgataattt 321  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||    
T  49425915 tagtgatatttgaacaaccatttcatacaacttttggtgataattt 49425870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 505
Target Start/End: Original strand, 30703688 - 30703744
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaa 505  Q
    |||||||||| ||| |||||||||| ||  |||||||||||||| ||||||||||||    
T  30703688 atgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttccaa 30703744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 4638104 - 4638069
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||| |||||||||||||||||    
T  4638104 tagtgatatttgaacaaccatttcatacaacttttg 4638069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 12034400 - 12034357
Alignment:
Q  278 agtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||    
T  12034400 agtgacatttgaacgactatttgatacaacttttgtgataattt 12034357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 31480026 - 31480061
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||||||||||||||| |||||    
T  31480026 tagtgatatttgaacaactatttcatacaatttttg 31480061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 2362548 - 2362510
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  2362548 tagtgatatttgaacaactatttgatacaatttttgtga 2362510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 7503644 - 7503610
Alignment:
Q  278 agtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||||| |||||||||||||||||    
T  7503644 agtgatatttgaacaaccatttcatacaacttttg 7503610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 45272050 - 45272084
Alignment:
Q  278 agtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||||||||||||||| |||||||||||||||||    
T  45272050 agtgatatttgaacaaccatttcatacaacttttg 45272084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 52020317 - 52020350
Alignment:
Q  278 agtgatatttgaacaactatttcatacaactttt 311  Q
    ||||||||||||||||| ||||||||||||||||    
T  52020317 agtgatatttgaacaaccatttcatacaactttt 52020350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 12067476 - 12067420
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaa 505  Q
    |||||||||| ||| |||| ||||| ||  |||||||||||||| ||||||||||||    
T  12067476 atgtaatcaacgtcactattatctttgactagttgtggaaaatacacggtcttccaa 12067420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 15062030 - 15061990
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||| |||||||||||||||||| |||||||| ||||||||    
T  15062030 aagagtagtgatatttgaacaaccatttcatataacttttg 15061990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 31290102 - 31290138
Alignment:
Q  279 gtgatatttgaacaactatttcatacaacttttgtga 315  Q
    |||||||||||||||| |||||| |||||||||||||    
T  31290102 gtgatatttgaacaaccatttcacacaacttttgtga 31290138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 509
Target Start/End: Original strand, 38810370 - 38810430
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagt 509  Q
    ||||||||||||| |||||| | || |||| ||| ||||||||| ||||||||| ||||||    
T  38810370 atgtaatcaatgttgctatcgtttttgatacgttatggaaaatacacggtcttctaaaagt 38810430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 51571603 - 51571567
Alignment:
Q  279 gtgatatttgaacaactatttcatacaacttttgtga 315  Q
    |||||||||||||||| |||| |||||||||||||||    
T  51571603 gtgatatttgaacaaccatttaatacaacttttgtga 51571567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 42915105 - 42915149
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||    
T  42915105 aaagagtagtgatatttgaacaactatttgatacaacttttgtga 42915149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 30042309 - 30042271
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttgtgataa 318  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  30042309 tgatatttgaacaactatttcatacaacttttatgataa 30042271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 36408098 - 36408140
Alignment:
Q  279 gtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  36408098 gtgatatttgaacaactatttgatacaacttttgtgacaattt 36408140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 36413221 - 36413263
Alignment:
Q  279 gtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  36413221 gtgatatttgaacaactatttgatacaacttttgtgacaattt 36413263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 510
Target Start/End: Original strand, 156735 - 156792
Alignment:
Q  453 aatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtc 510  Q
    |||||| |||||||||||||| || |||||||||| |||| ||||||||||| |||||    
T  156735 aatcaacgtcgctatcatctttgagaagttgtggataatacacggtcttccagaagtc 156792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 30973762 - 30973717
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaa-cttttgtgataattt 321  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||    
T  30973762 tagtgatatttgaacaactatttcatacaattttttgtgataattt 30973717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 36792518 - 36792477
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  36792518 aaagagtagtgatatttgaacaaccatttcatacaacttttg 36792477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 5234363 - 5234407
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||    
T  5234363 tagtgatatttgaacaaccatttgatacaacttttgtgacaattt 5234407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 31240833 - 31240793
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  31240833 aagagtagtgatatttgaacaaccatttcatacaacttttg 31240793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 31275325 - 31275281
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    |||||||||||||||||| |||| ||||||||||||||| |||||    
T  31275325 tagtgatatttgaacaaccatttgatacaacttttgtgacaattt 31275281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 3286995 - 3286952
Alignment:
Q  279 gtgatatttgaacaactatttcatacaacttttgtgataattta 322  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||    
T  3286995 gtgatatttgaacaaccatttcacacaacttttgtgacaattta 3286952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 22257088 - 22257123
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttg 312  Q
    |||||||||||||||||| |||||||||||||||||    
T  22257088 tagtgatatttgaacaaccatttcatacaacttttg 22257123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 47998778 - 47998731
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtgataa 318  Q
    ||||| |||||||||||||||||  |||| ||||||||||||||||||    
T  47998778 aaagagtagtgatatttgaacaatcatttgatacaacttttgtgataa 47998731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 48372112 - 48372151
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaactttt 311  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  48372112 aagagtagtgatatttgaacaactatttcatacaattttt 48372151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 1580174 - 1580208
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaactttt 311  Q
    |||||||||||||||||| ||||||||||||||||    
T  1580174 tagtgatatttgaacaaccatttcatacaactttt 1580208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 503
Target Start/End: Original strand, 50334706 - 50334760
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttcc 503  Q
    |||||||||| ||| |||||||||| ||  |||||||||||||| ||||||||||    
T  50334706 atgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtcttcc 50334760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 39440490 - 39440531
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  39440490 tgatatttgaacaaccattttttacaacttttgtgataattt 39440531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 51039003 - 51039044
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||| ||||||||||| |||||| |||||||||||||||||    
T  51039003 aaagagtagtgatatttaaacaaccatttcatacaacttttg 51039044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 51389494 - 51389457
Alignment:
Q  278 agtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  51389494 agtgatatttgaacaaccatttgatacaacttttgtga 51389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 38952868 - 38952824
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||| ||||| ||||| |||||| ||||||||||||||    
T  38952868 tagtgatatttaaacaattatttgatacaatttttgtgataattt 38952824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 2241712 - 2241759
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtgataa 318  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||    
T  2241712 aaagaatagtgatatttgaacaaccatttgatacaacttttgtgataa 2241759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 32253966 - 32253916
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||| |||||||||||||||||||||||  |||||||||||||| |||||    
T  32253966 aaagagtagtgatatttgaacaactatttggtacaacttttgtgacaattt 32253916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 32853036 - 32853074
Alignment:
Q  277 tagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  32853036 tagtgatatttgaacaactatttgatacaatttttgtga 32853074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 1156727 - 1156768
Alignment:
Q  280 tgatatttgaacaactatttcatacaacttttgtgataattt 321  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  1156727 tgatatttgaacaaccattttttacaacttttgtgataattt 1156768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 1897872 - 1897827
Alignment:
Q  270 caaagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    |||||| |||||||||||||||| |||||| | |||||||||||||    
T  1897872 caaagagtagtgatatttgaacatctatttgaaacaacttttgtga 1897827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 10628458 - 10628425
Alignment:
Q  278 agtgatatttgaacaactatttcatacaactttt 311  Q
    |||||||||||||||||||||| |||||||||||    
T  10628458 agtgatatttgaacaactatttgatacaactttt 10628425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 1031150 - 1031098
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtctt 501  Q
    |||||||||| ||| |||||||||| ||  |||||||||||||| ||||||||    
T  1031150 atgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtctt 1031098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 549
Target Start/End: Complemental strand, 33030 - 32931
Alignment:
Q  449 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaataaacggtcttccaaaagtcaccttctctatcatccccccaagtccatgcatgacaca 548  Q
    |||||||||| ||||||||| |||| || || ||||||| |||| ||||||||||  |||||  ||||  |||| |||||| |||||||||| |||||||    
T  33030 atgtaatcaacgtcgctatcgtctttgaaaaattgtggataatacacggtcttcctgaagtcttcttccttatcctccccc-aagtccatgcctgacaca 32932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 15076 - 15119
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaacttttgtga 315  Q
    |||| |||||||||||||||||||||||  ||||||||||||||    
T  15076 aagagtagtgatatttgaacaactatttggtacaacttttgtga 15119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 18187 - 18148
Alignment:
Q  272 aagactagtgatatttgaacaactatttcatacaactttt 311  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  18187 aagagtagtgatatttgaacaactatttgatacaactttt 18148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 11422 - 11463
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaacttttg 312  Q
    ||||| ||||||||||||||||||||||| | ||||||||||    
T  11422 aaagagtagtgatatttgaacaactattttagacaacttttg 11463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 27525 - 27485
Alignment:
Q  271 aaagactagtgatatttgaacaactatttcatacaactttt 311  Q
    ||||| |||||||||||||||||| ||||||||||| ||||    
T  27525 aaagagtagtgatatttgaacaaccatttcatacaattttt 27485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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