View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13364_low_10 (Length: 277)
Name: NF13364_low_10
Description: NF13364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13364_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 928908 - 929153
Alignment:
| Q |
1 |
tgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaaatgaacaatgcacttaaaattacat |
100 |
Q |
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| T |
928908 |
tgattccaatacaatataattgatttggtcagttaaataaatgaattgaattagtttaaccaagtaacatcccaaatgaacaatgcacttaaaa---cat |
929004 |
T |
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| Q |
101 |
tcaaatatataccc--gtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccacaaattcaacaacaatagaaatgaaat |
198 |
Q |
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| T |
929005 |
tcaaatatatacccctgtctctaaatttttgagtcaatccttaattagttgatgaactggaatggaacatccacaaattcaacaacaatagaaatgaaat |
929104 |
T |
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| Q |
199 |
tacaaattgagtacaacttcttcttaaattctaccataacctcctgact |
247 |
Q |
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| T |
929105 |
tacaaattgagtacaacttcttcttaaattctaccataacctcctgact |
929153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 1215280 - 1215212
Alignment:
| Q |
173 |
aaattcaacaacaatagaaatgaaattacaaattgagtacaacttcttcttaaattctaccataacctc |
241 |
Q |
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||||||||||||| || | |||||||| || |||| ||||||||| |||||||||| |||||||||| |
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| T |
1215280 |
aaattcaacaacatgaggattgaaattatgaaatgaggacaacttctccttaaattcttccataacctc |
1215212 |
T |
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