View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13364_low_2 (Length: 561)
Name: NF13364_low_2
Description: NF13364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13364_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 104 - 354
Target Start/End: Original strand, 43367317 - 43367571
Alignment:
| Q |
104 |
gcggtgaggtgtgatctagtaatattaccagactcttttttatccgttgattttattttcatcaattagtacacaatccttatc----taattcaccata |
199 |
Q |
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| T |
43367317 |
gcggtgaggtgtgatctagtaatattaccagactcttttttatccgttgattttattttcatcaattagtacacaatccttatctatctaattcaccata |
43367416 |
T |
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| Q |
200 |
tctgtcaatcattatcatcttactactacttctcttctaaccattattagtaactaatcatcatatacttctagactagacacctaatttcacctcacac |
299 |
Q |
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| T |
43367417 |
tctgtcaatcatcatcatcttactactacttctcttctaaccattattagtaactaatcatcatatacttctagactagacacctaatttcacctcacac |
43367516 |
T |
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| Q |
300 |
gttattacttttataagactatattaggattaggatatgatcatctacctctctc |
354 |
Q |
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| T |
43367517 |
gttattacttttataatactatattaggattaggatatgatcatctacctctctc |
43367571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 403 - 543
Target Start/End: Original strand, 43367603 - 43367731
Alignment:
| Q |
403 |
aaattaatcattcaattaaataagatcgattcttcttttaannnnnnnncaatcaatattaaacttattttacaagtcgattttgtaataggatttaatt |
502 |
Q |
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| T |
43367603 |
aaattaatcattcaattaaataagatcgattcttcttttaattttttt-caatcaatattaaacct----tataa-------ttgtaataggatttaatt |
43367690 |
T |
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| Q |
503 |
gctaaagaaaactctaaatatggagtggatagcaagttcat |
543 |
Q |
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| T |
43367691 |
gctaaagaaaactctaaatatggagtggatagcaagttcat |
43367731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43367227 - 43367260
Alignment:
| Q |
1 |
atgtgttgtagttagaatttccataatgcgtgtg |
34 |
Q |
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| T |
43367227 |
atgtgttgtagttagaatttccataatgcgtgtg |
43367260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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