View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13364_low_3 (Length: 493)

Name: NF13364_low_3
Description: NF13364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13364_low_3
NF13364_low_3
[»] chr4 (12 HSPs)
chr4 (1-293)||(23408328-23408620)
chr4 (328-462)||(23408192-23408326)
chr4 (1-78)||(23415712-23415789)
chr4 (1-77)||(23453376-23453452)
chr4 (1-77)||(23868930-23869006)
chr4 (1-77)||(23886025-23886101)
chr4 (1-77)||(24307421-24307497)
chr4 (1-77)||(26434222-26434298)
chr4 (1-77)||(26832933-26833009)
chr4 (1-77)||(23402272-23402348)
chr4 (1-77)||(26436002-26436078)
chr4 (1-77)||(34662045-34662121)
[»] chr1 (3 HSPs)
chr1 (1-66)||(33216643-33216708)
chr1 (2-54)||(29391665-29391717)
chr1 (13-77)||(45576413-45576477)
[»] chr7 (2 HSPs)
chr7 (3-75)||(47317482-47317554)
chr7 (2-54)||(40180297-40180349)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 23408620 - 23408328
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatttcgtttatgtttattggtt 100  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  23408620 tgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatttcgattatgtttattggtt 23408521  T
Q  101 tcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacttgaaaattgct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23408520 tcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacatgaaaattgct 23408421  T
Q  201 tgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagactgaatacattttctcataaaatatagttggattcctcct 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23408420 tgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagacggaatacattttctcataaaatatagttggattcctcct 23408328  T

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Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 328 - 462
Target Start/End: Complemental strand, 23408326 - 23408192
Alignment:
Q  328 tgtggattgtgattgtttataattaatcaattttattgacactgtaatttgatcttggcttagatgcaaaattaaggatgttttttgctgtaattctgca 427  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  23408326 tgtgggttgtgattgtttataattaatcaattttactgacactgtaatttgatcttggctgagatgcaaaattaaggatgttttttgctgtaattgtgca 23408227  T
Q  428 gaagatatctgctatatgtttaattataagtggac 462  Q
    |||||||||||||||||||||||||||||||||||    
T  23408226 gaagatatctgctatatgtttaattataagtggac 23408192  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 23415789 - 23415712
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac 78  Q
    |||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  23415789 tgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac 23415712  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23453452 - 23453376
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 77  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  23453452 tgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga 23453376  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23868930 - 23869006
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 77  Q
    |||||||||||||||| ||||||| ||||||||||||||||| || || |||||||||||||| || || |||||||    
T  23868930 tgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 23869006  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23886025 - 23886101
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 77  Q
    |||||||||||||||| |||||||||||||||| ||||| || ||||| |||||||| |||||||| || |||||||    
T  23886025 tgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 23886101  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 24307421 - 24307497
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 77  Q
    |||||||||||||||| |||||||||||||||||||||| || ||||| |||||||| ||||| || || |||||||    
T  24307421 tgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga 24307497  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26434222 - 26434298
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 77  Q
    |||||| || |||||| |||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26434222 tgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26434298  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26832933 - 26833009
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 77  Q
    |||||| || |||||| |||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26832933 tgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26833009  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23402272 - 23402348
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 77  Q
    |||||||||||||||| |||||||||||||||| || || || ||||| |||||||| |||||||| || |||||||    
T  23402272 tgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga 23402348  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26436002 - 26436078
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 77  Q
    |||||| || |||||| |||||||||||| ||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26436002 tgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga 26436078  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34662121 - 34662045
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 77  Q
    |||||||||||| ||| |||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| |||||||    
T  34662121 tgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga 34662045  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33216643 - 33216708
Alignment:
Q  1 tgttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttac 66  Q
    |||||||| ||||||| ||||||| |||||||||||||| || |||||||||||||| ||||||||    
T  33216643 tgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggctgtgaccaagtttac 33216708  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 29391665 - 29391717
Alignment:
Q  2 gttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgt 54  Q
    |||||||| |||||| |||| || ||||||||||| ||||| |||||||||||    
T  29391665 gttcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt 29391717  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 45576413 - 45576477
Alignment:
Q  13 tgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 77  Q
    |||| |||| ||||||| ||||||||| || ||||| |||||||| || || |||||||||||||    
T  45576413 tgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga 45576477  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 47317482 - 47317554
Alignment:
Q  3 ttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctta 75  Q
    |||||||||||||| ||||||| |||| ||||||||| || ||||| |||||||| |||||||| || |||||    
T  47317482 ttcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagctgtgaccaagtttactagttctta 47317554  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 40180349 - 40180297
Alignment:
Q  2 gttcttcctggtgaagtggccaagcatgctgtttctgaaggcaccaaggctgt 54  Q
    ||||||||||| ||| |||| || ||||||||||||||||| || ||||||||    
T  40180349 gttcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt 40180297  T

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