View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13364_low_5 (Length: 398)
Name: NF13364_low_5
Description: NF13364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13364_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 33186771 - 33186589
Alignment:
| Q |
3 |
agatggcgagctacatacttggctttccatatggttagtgatcttcataaataaacctttatttgaccacatatatataatatggtattgataacactaa |
102 |
Q |
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| T |
33186771 |
agatggcgagctacatacttggctttccatatggttagtgatcttcataaataaacctttatttgaccacatatatataatatggtattgataacactaa |
33186672 |
T |
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| Q |
103 |
aaaacaaattacattttcacaaaccaatagtgtatgctatatgtgtcactatcattctcatacatttatatctcaaaattgaa |
185 |
Q |
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| T |
33186671 |
aaaacaaattacattttcacaaaccaatagtgtatgctatatgtgtcactatcattctcatacatttatatctcaaaattgaa |
33186589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 33186560 - 33186391
Alignment:
| Q |
210 |
gtttgaaataatgaattaacttcattttatgcatacccacaaaacccatttccacaaggatcaccatttgaacactccttcttacacttgccacaatgac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33186560 |
gtttgaaataatgaattaacttcattttatgcatacccacaaaacccatttccacaaggatcaccatttgaacactccttcttacacttgccacaatgac |
33186461 |
T |
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| Q |
310 |
gaacatttgacaaaacattggtacaaactccattgcaacatctttctccttgcttgcatttgttgccaca |
379 |
Q |
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| T |
33186460 |
gaacatttgacaaaacattggtacaaactccattgcaacatctttctccttgcttgcatttgttgccaca |
33186391 |
T |
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