View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13364_low_9 (Length: 281)
Name: NF13364_low_9
Description: NF13364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13364_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 9699671 - 9699907
Alignment:
| Q |
14 |
aacctgtgcagcagcgtgattcttgccaaggaacaattaaaatctgaactccttaccaaggttggtttgtggagcatcttagaagtagctgatctgatcg |
113 |
Q |
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| T |
9699671 |
aacctgtacagcagcgtgattcttgccaaggaacaattaaaatctgaactccttaccaaggttggtttgtggagcatcttagaagtagctgatctgatcg |
9699770 |
T |
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| Q |
114 |
gtggatctttgcctacttatcaccctgatgtacttcttatcaatataagttcaggtaatggttgagtaaattgttttctttcaggatgactgatgactca |
213 |
Q |
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| T |
9699771 |
gtggatctttgcctacttatcaccctgatgtacttcttatcaatataagttcaggtaatggttgagtaaattgttttctttcaggatgactgatgactca |
9699870 |
T |
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| Q |
214 |
acaaatttaagtcatgtttggataaacaacttaatga |
250 |
Q |
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| T |
9699871 |
acaaatttaagtcatgtttggataaacaacttaatga |
9699907 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 42169730 - 42169677
Alignment:
| Q |
228 |
tgtttggataaacaacttaatgagcgtcatagcgtaaggacttatcatgatatt |
281 |
Q |
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| T |
42169730 |
tgtttggataaacaacttaattagcctcatagcataaggactcatcatgatatt |
42169677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 45201156 - 45201123
Alignment:
| Q |
213 |
aacaaatttaagtcatgtttggataaacaactta |
246 |
Q |
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| T |
45201156 |
aacaaatttaaggcatgtttggataaacaactta |
45201123 |
T |
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