View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13365_high_1 (Length: 339)
Name: NF13365_high_1
Description: NF13365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13365_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 32706649 - 32706975
Alignment:
| Q |
1 |
ttatagtttccttcctgttgccataattttcataaagaacagttnnnnnnntaggcatacttcaaaggacagagtgacgaagtacaattctacctccaaa |
100 |
Q |
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| T |
32706649 |
ttatagtttccttcctgttgccataattttcataaagaacagttaaaaaa-taggcatacttcaaaggacagagtgacgaagtacaattctacctccaaa |
32706747 |
T |
|
| Q |
101 |
acagacatgaattgaactaaatgttattgttactatccctaagaatgtgtcctcaacattacacccaattgtctacttttataactttcaatcaaactaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32706748 |
acagacatgaattgaactaaatgttattgttactatccctaagaatgtgtcctcaacattacacccaattgtctacttttataactttcaatctaactaa |
32706847 |
T |
|
| Q |
201 |
ctcaagacaaccttcattgcccataaattatccaatcatgcttcccttgaaccaacctagggatatagtctcgctcatcaacctgcttagcccctcac-c |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32706848 |
ctcaagacaaccttcattgcccataaattatccaatcatgcttcccttgatccaacctagggatatagtctcgctcatcaacctgcttagcccctcactc |
32706947 |
T |
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| Q |
300 |
acaagcaaaaattgaacagtagaaagtg |
327 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
32706948 |
acaagcaaaaattgaacagtagaaagtg |
32706975 |
T |
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