View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13365_low_2 (Length: 305)
Name: NF13365_low_2
Description: NF13365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13365_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 38 - 275
Target Start/End: Original strand, 43383301 - 43383541
Alignment:
| Q |
38 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
137 |
Q |
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| T |
43383301 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
43383400 |
T |
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| Q |
138 |
ggcattaaccctcctcctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaatc |
237 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43383401 |
ggcattaaccctccacctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttactttctaattcaaatc |
43383500 |
T |
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| Q |
238 |
caaagaacaagaaagc---agcaaaatcaacaacaacggtg |
275 |
Q |
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| T |
43383501 |
caaagaacaagaaagcaaaagcaaaagcaacaacaacggtg |
43383541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 25870023 - 25870237
Alignment:
| Q |
39 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagag |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25870023 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagag |
25870122 |
T |
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| Q |
139 |
gcattaaccctcctcctaatttcagaagacaacaacttg---ttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaa |
235 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25870123 |
gcattaaccctcctcctaatttcagaagacaacaacaacaacttgtgactccagaagaacaggaaggtgctgcttctttgcttttacttgctaattcaaa |
25870222 |
T |
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| Q |
236 |
tccaaagaacaagaa |
250 |
Q |
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| T |
25870223 |
tccaaagaacaagaa |
25870237 |
T |
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Back To:
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