View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13365_low_3 (Length: 249)
Name: NF13365_low_3
Description: NF13365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13365_low_3 |
 | |
|
| [»] chr1 (26 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 26)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 10974379 - 10974620
Alignment:
| Q |
8 |
cacaatgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatca |
107 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
10974379 |
cacaatgcttttatctgtaggacaaagtctagcaagtccaaaatcagaaacttttggattgaaatattcatcaagaaggatggtatgaggctttatatca |
10974478 |
T |
|
| Q |
108 |
aagtgtagaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10974479 |
aagtgtagaattttcatatcacatccattatgaaagtactcaattccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattac |
10974578 |
T |
|
| Q |
208 |
tctcttcattatgagcaaatatgtatttttccagtgacccat |
249 |
Q |
| |
|
|||||||| | |||| ||||||||||||||||||| |||||| |
|
|
| T |
10974579 |
tctcttcaatgtgagaaaatatgtatttttccagttacccat |
10974620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 11007858 - 11008102
Alignment:
| Q |
5 |
tgacacaatgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttata |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11007858 |
tgacacaatgcttttatctgtaggacaaagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatg |
11007957 |
T |
|
| Q |
105 |
tcaaagtgtagaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaat |
204 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| | || ||||| ||| ||||||||||||| |
|
|
| T |
11007958 |
tcaaagtgtagaattttcatattgcatccattgtgcaagtactcaatgccacgagccactccaagtgaaattgaatacaattgttcgcaactcaaggaat |
11008057 |
T |
|
| Q |
205 |
tactctcttcattatgagcaaatatgtatttttccagtgacccat |
249 |
Q |
| |
|
| ||||||| |||||| ||||||||||||||| ||||| |||| |
|
|
| T |
11008058 |
aattctcttcggtatgagaaaatatgtatttttctagtgatccat |
11008102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 11033315 - 11033555
Alignment:
| Q |
9 |
acaatgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaa |
108 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11033315 |
acaatgcttttatctgtaggacaaagtctagctagtccaaaatcagaaacttttgggttgaaattctcatcaagaaggatgttatgaggctttatgtcaa |
11033414 |
T |
|
| Q |
109 |
agtgtagaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattact |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| | || ||||| ||| ||||||||||||| | | |
|
|
| T |
11033415 |
agtgtagaattttcatatcgcatccattatgcaagtactcaatgcctcgagccactccaagagaaattgaatacaattgttcgcaactcaaggaataatt |
11033514 |
T |
|
| Q |
209 |
ctcttcattatgagcaaatatgtatttttccagtgacccat |
249 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
11033515 |
ttcttcattatgagaaaatatgtatttttcgagtgatccat |
11033555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 11011020 - 11011264
Alignment:
| Q |
5 |
tgacacaatgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttata |
104 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11011020 |
tgacacaatgcttttatctgtaggacaaagtctagctagtccaaaatcagaaacttttggattgaaattttcatcaagaagaatgttatgaggctttata |
11011119 |
T |
|
| Q |
105 |
tcaaagtgtagaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaat |
204 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| | || ||||| ||| ||||| ||||||| |
|
|
| T |
11011120 |
tcaaagtgtagaattttcatattgcatccatgatgcaagtactcaatgccacgagccactccaagagaaattgaatacaattgttcgcaacttaaggaat |
11011219 |
T |
|
| Q |
205 |
tactctcttcattatgagcaaatatgtatttttccagtgacccat |
249 |
Q |
| |
|
| |||||| |||||| ||||||||||||||| ||||| |||| |
|
|
| T |
11011220 |
aattctcttttgtatgagaaaatatgtatttttcaagtgatccat |
11011264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 11028587 - 11028354
Alignment:
| Q |
5 |
tgacacaatgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttata |
104 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11028587 |
tgacacaatgctattacctgtaggacaaagtctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttata |
11028488 |
T |
|
| Q |
105 |
tcaaagtgtagaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaat |
204 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| || ||||||||||| |||||||||||||| |||| ||| ||| |
|
|
| T |
11028487 |
tcaaagtgtagaattttcatattacatccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataat |
11028388 |
T |
|
| Q |
205 |
tactctcttcattatgagcaaatatgtatttttc |
238 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||| |
|
|
| T |
11028387 |
tactctcttcaatatgagaaaatatatatttttc |
11028354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 10914719 - 10914963
Alignment:
| Q |
5 |
tgacacaatgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttata |
104 |
Q |
| |
|
||||||||||||||||||||||||| | || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10914719 |
tgacacaatgcttttatctgtaggagaaagcctggctagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttata |
10914818 |
T |
|
| Q |
105 |
tcaaagtgtagaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaat |
204 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| | || ||||| ||| ||||| ||||||| |
|
|
| T |
10914819 |
tcaaagtgtagaattttcatattgcatccattgtgcaagtactcaatgccacgagccactccaagagaaattgaatacaattgttcgcaacttaaggaat |
10914918 |
T |
|
| Q |
205 |
tactctcttcattatgagcaaatatgtatttttccagtgacccat |
249 |
Q |
| |
|
| |||||| |||||| ||||||||||||||| ||||| |||| |
|
|
| T |
10914919 |
aattctcttttgtatgagaaaatatgtatttttcgagtgatccat |
10914963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 11005001 - 11004758
Alignment:
| Q |
6 |
gacacaatgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatat |
105 |
Q |
| |
|
|||||||||||||| ||||||||| | | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11005001 |
gacacaatgcttttgtctgtaggagaaaccctagctaatccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatat |
11004902 |
T |
|
| Q |
106 |
caaagtgtagaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaatt |
205 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||| || ||||| || |||||||||||||||| |||||||| ||||||||| || || |
|
|
| T |
11004901 |
caaagtgtagaattttcatattgcatccattatgcaagtatgcaatacctcgagctacaccaagagaaatggcatacaattttttacaactcaaagagtt |
11004802 |
T |
|
| Q |
206 |
actctcttcattatgagcaaatatgtatttttccagtgacccat |
249 |
Q |
| |
|
|||||||||| || ||| ||||||||||||||||||||| |||| |
|
|
| T |
11004801 |
actctcttcaataagagaaaatatgtatttttccagtgatccat |
11004758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 10903556 - 10903800
Alignment:
| Q |
5 |
tgacacaatgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttata |
104 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
10903556 |
tgacacaatgcttttatctgtaggagaaagtctggcaagtccaaaatcagaaacttttggattgaaactttcatcaagaagaatgttatgaggctttata |
10903655 |
T |
|
| Q |
105 |
tcaaagtgtagaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaat |
204 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||| ||||||| |||||||| ||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
10903656 |
tcaaagtgtagaattttcacattgcatccgttatgcaagtacgcaatgcctcgagccacttcaacagaaatggcatacaacttttcacaactcaaggaaa |
10903755 |
T |
|
| Q |
205 |
tactctcttcattatgagcaaatatgtatttttccagtgacccat |
249 |
Q |
| |
|
|| || | |||||| ||||||||||||||| |||||||||| |
|
|
| T |
10903756 |
aacaatccttggtatgagaaaatatgtatttttcaagtgacccat |
10903800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 123 - 249
Target Start/End: Original strand, 10983762 - 10983888
Alignment:
| Q |
123 |
atatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctcttcattatgag |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10983762 |
atatcacatccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaactcaaggaattactctcttcattatgag |
10983861 |
T |
|
| Q |
223 |
caaatatgtatttttccagtgacccat |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
10983862 |
aaaatatgtatttttccagtgacccat |
10983888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 10979454 - 10979574
Alignment:
| Q |
5 |
tgacacaatgcttttatctgtaggacagagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttata |
104 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979454 |
tgacacaaagcttttatctgtaggacaaagtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttata |
10979553 |
T |
|
| Q |
105 |
tcaaagtgtagaattttcata |
125 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10979554 |
tcaaagtgtagaattttcata |
10979574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 9234005 - 9233884
Alignment:
| Q |
39 |
gcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcacatccattat |
138 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||| ||| || ||||| || ||||||||||| |||||||| |||||||||| ||||||||| || | || |
|
|
| T |
9234005 |
gcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgat |
9233906 |
T |
|
| Q |
139 |
gcaagtactcaatgccacgagc |
160 |
Q |
| |
|
||| ||||| || |||||||| |
|
|
| T |
9233905 |
gcagatactctatcccacgagc |
9233884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 9453770 - 9453679
Alignment:
| Q |
39 |
gcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcaca |
130 |
Q |
| |
|
||||| |||||||| |||||||| || |||||||||| |||||||||||||| |||||||| |||||||| || | ||||| ||||||||| |
|
|
| T |
9453770 |
gcaagaccaaaatctgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcaca |
9453679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 8999839 - 8999923
Alignment:
| Q |
51 |
tcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcacatccat |
135 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||||||||| |||||||| |||||||| |||| ||| ||||| || ||||||| |
|
|
| T |
8999839 |
tcagagacttttggtgtgaagttttcatcaagaaggatgttgtgaggcttgatatcaaaatgtaaaatcttcatttcgcatccat |
8999923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 8964681 - 8964772
Alignment:
| Q |
44 |
tccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcacatccat |
135 |
Q |
| |
|
|||||| ||||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||| || | ||| ||||| || ||||||| |
|
|
| T |
8964681 |
tccaaagtcagagacttttggggtgaaattctcatcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatcttcatttcgcatccat |
8964772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 9318230 - 9318103
Alignment:
| Q |
45 |
ccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcacatccattatgcaagt |
144 |
Q |
| |
|
||||| || |||||||| ||| | || || |||||||||||||||||||| ||||| |||||||| || | |||| ||| |||||||| | |||||| | |
|
|
| T |
9318230 |
ccaaagtctgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttcatgcaaat |
9318131 |
T |
|
| Q |
145 |
actcaatgccacgagccaccccaagaga |
172 |
Q |
| |
|
| |||| ||||||||||| |||||||| |
|
|
| T |
9318130 |
aagcaattccacgagccactccaagaga |
9318103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 9399796 - 9399887
Alignment:
| Q |
39 |
gcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcaca |
130 |
Q |
| |
|
||||| ||||| || |||||||| || |||||||||| |||||||||||||| |||||||| |||||||| || | ||||| ||||||||| |
|
|
| T |
9399796 |
gcaagaccaaagtccgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcaca |
9399887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 9384389 - 9384483
Alignment:
| Q |
39 |
gcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcacatcc |
133 |
Q |
| |
|
|||||||||||||| ||||| |||||| || | ||| || ||||| || ||||||||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
9384389 |
gcaagtccaaaatccgaaacctttggaacaaactcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacatcc |
9384483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 8874009 - 8873918
Alignment:
| Q |
44 |
tccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcacatccat |
135 |
Q |
| |
|
|||||| ||||| ||||| ||| | || || ||||||||||||||||| |||||||| |||||||| || | ||| ||||| |||||||||| |
|
|
| T |
8874009 |
tccaaagtcagagactttcggagtaaagttctcatcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatcttcatttcacatccat |
8873918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 9320064 - 9320199
Alignment:
| Q |
37 |
tagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcacatccatt |
136 |
Q |
| |
|
||||||| ||||| || |||||||| || | || || |||||||||||||||||||| ||||| |||||||| || | ||||| ||| |||||||| | |
|
|
| T |
9320064 |
tagcaagaccaaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttg |
9320163 |
T |
|
| Q |
137 |
atgcaagtactcaatgccacgagccaccccaagaga |
172 |
Q |
| |
|
||| || || | || ||||||||||| |||||||| |
|
|
| T |
9320164 |
atgtaaataagccataccacgagccactccaagaga |
9320199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 9432783 - 9432692
Alignment:
| Q |
39 |
gcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcaca |
130 |
Q |
| |
|
||||| ||||| || |||||||| || |||||||||| || ||||||||||| |||||||| |||||||| || | ||||| ||||||||| |
|
|
| T |
9432783 |
gcaagaccaaagtccgaaactttagggatgaaattttcgtccagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcaca |
9432692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 9350381 - 9350477
Alignment:
| Q |
37 |
tagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcacatcc |
133 |
Q |
| |
|
||||||| ||||| || |||||||| || | || || |||||||||||||||||||| ||||| |||||||| || | ||||| ||| |||||||| |
|
|
| T |
9350381 |
tagcaagaccaaagtctgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatcc |
9350477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 9464285 - 9464352
Alignment:
| Q |
42 |
agtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaa |
109 |
Q |
| |
|
|||| |||||| ||||| |||||| |||| ||| | |||||||| ||||||||||||||||| ||||| |
|
|
| T |
9464285 |
agtcaaaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaa |
9464352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 9488717 - 9488784
Alignment:
| Q |
42 |
agtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaa |
109 |
Q |
| |
|
|||| |||||| ||||| |||||| |||| ||| | |||||||| ||||||||||||||||| ||||| |
|
|
| T |
9488717 |
agtctaaaatctgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaa |
9488784 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 172
Target Start/End: Original strand, 8956226 - 8956320
Alignment:
| Q |
78 |
tcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcacatccattatgcaagtactcaatgccacgagccaccccaagaga |
172 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||| ||||| ||| ||||| || | |||||| || |||| ||||| || || |||||||| |
|
|
| T |
8956226 |
tcaagaagaatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatgcaaataagcaattccacgtgcaactccaagaga |
8956320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 9056728 - 9056846
Alignment:
| Q |
42 |
agtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcacatccattatgca |
141 |
Q |
| |
|
|||||||| ||||| | |||||| | ||||| || ||||| ||||| || || ||||| |||||||| || | ||||||||| |||||||||||||| | |
|
|
| T |
9056728 |
agtccaaagtcagatatctttggaataaaattctcgtcaagtaggatattgtgtggcttgatatcaaaatgcaaaattttcatttcacatccattatgga |
9056827 |
T |
|
| Q |
142 |
agtactcaatgccacgagc |
160 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
9056828 |
gataatcaatcccacgagc |
9056846 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 8942220 - 8942272
Alignment:
| Q |
78 |
tcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatatcaca |
130 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||| ||||| ||| ||||| |
|
|
| T |
8942220 |
tcaagaagtatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcaca |
8942272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 40225245 - 40225285
Alignment:
| Q |
39 |
gcaagtccaaaatcagaaacttttggattgaaattttcatc |
79 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
40225245 |
gcaagtccaaaatcagagagttttggattgaaattttcatc |
40225285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 27692614 - 27692659
Alignment:
| Q |
69 |
aaattttcatcaagaaggatgttatgaggctttatatcaaagtgta |
114 |
Q |
| |
|
||||| || |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
27692614 |
aaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta |
27692659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 7945933 - 7945893
Alignment:
| Q |
39 |
gcaagtccaaaatcagaaacttttggattgaaattttcatc |
79 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
7945933 |
gcaagaccaaaatcagaaagctttggattgaaattttcatc |
7945893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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