View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13365_low_5 (Length: 233)
Name: NF13365_low_5
Description: NF13365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13365_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 8348992 - 8348780
Alignment:
| Q |
1 |
ccgttggagatagtttcaatccaagtgtttatgagatgatacttcatttgaagggtttaccttttatggatgctgatcccgaaccgtggatgagaaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8348992 |
ccgttggagatagtttcaatccaagtgtttatgagatgatacttcatttgaagggtttaccttttatggatgctgatcccgaaccgtggatgagaaattt |
8348893 |
T |
|
| Q |
101 |
atccgtcggagaacttattgatgttaaatcatcggttgttagttttcgcggcattgaaaaggtttccaacattgttgatgccttgaagaacactacacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8348892 |
atccgtcggagaacttattgatgttaaatcatcggttgttagttttcgcggcattgaaaaggtttccaacattgttgatgccttgaagaacactacacat |
8348793 |
T |
|
| Q |
201 |
aatggttttcctg |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8348792 |
aatggttttcctg |
8348780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University