View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13365_low_6 (Length: 226)

Name: NF13365_low_6
Description: NF13365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13365_low_6
NF13365_low_6
[»] chr1 (9 HSPs)
chr1 (7-226)||(10983984-10984203)
chr1 (33-226)||(10915059-10915252)
chr1 (7-224)||(11004443-11004660)
chr1 (18-225)||(11011361-11011568)
chr1 (7-225)||(11033652-11033870)
chr1 (7-225)||(11008199-11008417)
chr1 (12-225)||(10903897-10904110)
chr1 (101-197)||(11028129-11028225)
chr1 (34-89)||(11028077-11028132)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 10984203 - 10983984
Alignment:
Q  7 atgatggcattgaagattttctgaggagtgacaatagcatcatgccgataaggtactcttacaaagacataaaaaagataacagaacaattcaaaacaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10984203 atgatggcattgaagattttctgaggagtgacaatagcatcatgccgataaggtactcttacaaagacataaaaaagataacagaacaattcaaaacaaa 10984104  T
Q  107 attaggcaatggaggttatggaactgtttttaaaggacaactacgaagcggttgtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10984103 attaggcaatggaggttatggaactgtttttaaaggacaactacgaagcggttgtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaa 10984004  T
Q  207 gatttcatcaatgaagttgt 226  Q
    ||||||||||||||||||||    
T  10984003 gatttcatcaatgaagttgt 10983984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 10915252 - 10915059
Alignment:
Q  33 agtgacaatagcatcatgccgataaggtactcttacaaagacataaaaaagataacagaacaattcaaaacaaaattaggcaatggaggttatggaactg 132  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||    
T  10915252 agtgacaataacatcatgcctataaggtactcttacaaagacataaaaaagataacacaccagttcaaaacaaaattaggcaatggaggttatggatctg 10915153  T
Q  133 tttttaaaggacaactacgaagcggttgtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaatgaagttgt 226  Q
    |||| ||||||||||| | ||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  10915152 ttttcaaaggacaacttcaaagtggtcgtcttgtagcagttaaattattggacaaagccaagtccaacggtcaagattttatcaatgaagttgt 10915059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 11004443 - 11004660
Alignment:
Q  7 atgatggcattgaagattttctgaggagtgacaatagcatcatgccgataaggtactcttacaaagacataaaaaagataacagaacaattcaaaacaaa 106  Q
    |||||||||| |||||||||||  | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  11004443 atgatggcatcgaagattttctacgcagtgataatagcatcatgcctataaggtactcttacaaagacataaaaaagataacagaacaattcaagataaa 11004542  T
Q  107 attaggcaatggaggttatggaactgtttttaaaggacaactacgaagcggttgtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaa 206  Q
    | ||||||| ||||||||||||||||||||||||||| |||| ||||| | | |||||||||| |||||||||||||||||||||||| |||| ||||||    
T  11004543 actaggcaacggaggttatggaactgtttttaaaggaaaacttcgaagtgatcgtcttgtagcggtcaaattattggacaaagccaagaccaacggtcaa 11004642  T
Q  207 gatttcatcaatgaagtt 224  Q
    |||||  |||||||||||    
T  11004643 gattttgtcaatgaagtt 11004660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 11011568 - 11011361
Alignment:
Q  18 gaagattttctgaggagtgacaatagcatcatgccgataaggtactcttacaaagacataaaaaagataacagaacaattcaaaacaaaattaggcaatg 117  Q
    ||||||||||| || ||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| ||||||||||| |||||| |||||||||    
T  11011568 gaagattttcttagtagtgacaatagcatcatccctataaggtactcttacagagatataaaaaagataaccgaacaattcaagacaaaactaggcaatg 11011469  T
Q  118 gaggttatggaactgtttttaaaggacaactacgaagcggttgtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaa 217  Q
    |||| |||||| ||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||    
T  11011468 gagggtatggatctgttttcaaaggacaacttcgaagtggtcgtcttgtagcagtcaaattattggacaaagccaagtccagtgatcaagattttgtcaa 11011369  T
Q  218 tgaagttg 225  Q
    ||||||||    
T  11011368 tgaagttg 11011361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 11033870 - 11033652
Alignment:
Q  7 atgatggcattgaagattttctgaggagtgacaatagcatcatgccgataaggtactcttacaaagacataaaaaagataacagaacaattcaaaacaaa 106  Q
    |||||||||| |||||||||||  | |||||||||||||||||||| || ||||| ||||||||||||||||||| |||||| ||||||||||| |||||    
T  11033870 atgatggcatcgaagattttctacgtagtgacaatagcatcatgcctattaggtattcttacaaagacataaaaaggataactgaacaattcaagacaaa 11033771  T
Q  107 attaggcaatggaggttatggaactgtttttaaaggacaactacgaagcggttgtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaa 206  Q
    | |||||||||||||||||||| | ||||||||||||||||| ||||| ||| |||| |||||||||||||||||||| | |||||||||||| | || |    
T  11033770 actaggcaatggaggttatggatccgtttttaaaggacaacttcgaagtggtcgtctggtagcagtcaaattattggatagagccaagtccaacgatcga 11033671  T
Q  207 gatttcatcaatgaagttg 225  Q
    |||||  ||||||||||||    
T  11033670 gattttgtcaatgaagttg 11033652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 11008417 - 11008199
Alignment:
Q  7 atgatggcattgaagattttctgaggagtgacaatagcatcatgccgataaggtactcttacaaagacataaaaaagataacagaacaattcaaaacaaa 106  Q
    |||||||| | ||||||||||| || ||||| ||||||||||| || |||||||||||||||||||| |||||||||||||| | | | ||||  |||||    
T  11008417 atgatggcgtcgaagattttctaagtagtgataatagcatcatccctataaggtactcttacaaagagataaaaaagataaccggaaatttcatgacaaa 11008318  T
Q  107 attaggcaatggaggttatggaactgtttttaaaggacaactacgaagcggttgtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaa 206  Q
    | |||||||||||||||||||| ||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||  ||||||||||| | || |    
T  11008317 actaggcaatggaggttatggatctgttttcaaaggacaacttcgaagtggtcgtcttgtagcagtcaaattattggacagtgccaagtccaacgatcga 11008218  T
Q  207 gatttcatcaatgaagttg 225  Q
    |||||  ||||||||||||    
T  11008217 gattttgtcaatgaagttg 11008199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 10904110 - 10903897
Alignment:
Q  12 ggcattgaagattttctgaggagtgacaatagcatcatgccgataaggtactcttacaaagacataaaaaagataacagaacaattcaaaacaaaattag 111  Q
    ||||| ||||||||||||   ||| |||||  ||||||||| ||||| ||||| ||||||||||| ||||| ||||| || |||||||| ||||||||||    
T  10904110 ggcatcgaagattttctgcacagtaacaatgacatcatgcctataagatactcatacaaagacatcaaaaaaataactgagcaattcaagacaaaattag 10904011  T
Q  112 gcaatggaggttatggaactgtttttaaaggacaactacgaagcggttgtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagattt 211  Q
    | |||||||| |||||  |||| |  ||||||||||| ||||| ||| |||||| ||| || |||||||||||||||||||| |||||||||||||||||    
T  10904010 ggaatggaggctatggctctgtctacaaaggacaacttcgaagtggtcgtcttgcagcggtgaaattattggacaaagccaaatccaatggtcaagattt 10903911  T
Q  212 catcaatgaagttg 225  Q
     |||||||||||||    
T  10903910 tatcaatgaagttg 10903897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 11028129 - 11028225
Alignment:
Q  101 aacaaaattaggcaatggaggttatggaactgtttttaaaggacaactacgaagcggttgtcttgtagcagtcaaattattggacaaagccaagtcc 197  Q
    ||||||| |||| | ||||||||||||  ||||||| ||||||||||| ||||  || || ||||||||||| ||||||||||||||| ||||||||    
T  11028129 aacaaaactaggaagtggaggttatgggtctgttttcaaaggacaacttcgaaatggctgacttgtagcagtaaaattattggacaaaaccaagtcc 11028225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 11028077 - 11028132
Alignment:
Q  34 gtgacaatagcatcatgccgataaggtactcttacaaagacataaaaaagataaca 89  Q
    ||||||||||||||||||| ||||||||||  | |||||||||||| |||||||||    
T  11028077 gtgacaatagcatcatgccaataaggtacttcttcaaagacataaataagataaca 11028132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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