View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_high_1 (Length: 860)
Name: NF13366_high_1
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 554; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 18 - 628
Target Start/End: Original strand, 46616515 - 46617126
Alignment:
| Q |
18 |
tgatttaggtaaccgtgttgaagtgagggttttgatgtttcagatcgtattgccaattttcgtaggcttatcagctgaaaattgttccatgttgcttgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46616515 |
tgatttaggtaaccgtgttgaagtgagggttttgatgtttcagatcgtattgccaattttcgtaggcttatcagctgaaaattgttccatgttgcttgtg |
46616614 |
T |
|
| Q |
118 |
ttctattctgaccccgagttgattgatagttattaaagtgaaaatatttgagatctaatactctgttaatatgcaagggctattaatttagaaaacaaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46616615 |
ttctattctgaccccgagttgattgatagttattaaagtgaaaatatttgagatctaatactctgttaatatgcaagggctgttaatttagaaaacaaag |
46616714 |
T |
|
| Q |
218 |
tatcaattccttagggatagatattac-ttttatgcgtagttacaattgcagctcatgttttaagtatgctttttgattatgctatctaatctacaagat |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46616715 |
tatcaattccttagggatagatattactttttatgcgtagttacaattgcagctcatgttttaagtatgctttttgattatgctatctaatctacaagat |
46616814 |
T |
|
| Q |
317 |
ttgagttatccaatcatgtagataaatgttatctgatcatggcttaagaataaatgttataagatggaagaggatcaagagggatctgggttgattatct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46616815 |
ttgagttatccaatcatgtagataaatgttatctgatcatggcttaagaataaatgttataagatggaagaggatcaagagggatctgggttgattatct |
46616914 |
T |
|
| Q |
417 |
tgtttgttggtattcaaaattcttcacccttatataagggnnnnnnncactttcaatgtcttcccttgctcgttgcatggtgtattcattttgaagctgc |
516 |
Q |
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| T |
46616915 |
tgtttgttggtattcaaaattcttcacccttatataagggtttttttcactttcaatgtcttcccttgctcgttgcatggtgtattcattttgaagctgc |
46617014 |
T |
|
| Q |
517 |
gtcaacaattgtgtctttcagnnnnnnngttgacattttttggtttattgactagggaaaattatagctttttatgtgagtgatttcatttaggtaacct |
616 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46617015 |
gtcaacaattgtgtctttcagaaaaaaagttgacattttttggtttattgacaagggaaaattatagctttttatgtgagtgatttcatttaggtaacct |
46617114 |
T |
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| Q |
617 |
tgttgaggtgga |
628 |
Q |
| |
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|||||||||||| |
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| T |
46617115 |
tgttgaggtgga |
46617126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 654 - 850
Target Start/End: Original strand, 46617155 - 46617351
Alignment:
| Q |
654 |
gtaaccatttagaaaacaaagtaacaattccacagggatagttggatactcatagctttaaaatctaaattctttcattaagtagaatgatgctttcaaa |
753 |
Q |
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| T |
46617155 |
gtaaccatttagaaaacaaagtaacaattccacagggatagttggatactcatagttttgaaatctaaattctttcattaagtagaatgatgctttcaaa |
46617254 |
T |
|
| Q |
754 |
aaccagtggcatggttaatatgaatgggtgatgagtaacactgctttacttttatgcctcgtcacaactgatactttaagtatgctcttgatgatgt |
850 |
Q |
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| T |
46617255 |
aaccagtggcatggttaatatgaatggttgatgagtaacactgctttacttttatgcctcgtcacaactgatactttaagtatgctcttgatgatgt |
46617351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 654 - 850
Target Start/End: Original strand, 46635843 - 46636048
Alignment:
| Q |
654 |
gtaaccatttagaaaacaaagtaacaattccacagggatagttggatactcatagctttaaaatctaaattctttcattaagtagaatgatgctttcaaa |
753 |
Q |
| |
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||||||||||| ||||||| |||||||||||| | ||| |||| ||||| |||| ||| ||||||||||||||| |||| | | |||||||||||||| |
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| T |
46635843 |
gtaaccatttacaaaacaatgtaacaattccatacggagagtttcatacttatagttttcaaatctaaattcttttgttaacttgtatgatgctttcaaa |
46635942 |
T |
|
| Q |
754 |
aaccagtggc-atggttaatatgaa--------tgggtgatgagtaacactgctttacttttatgcctcgtcacaactgatactttaagtatgctcttga |
844 |
Q |
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|||||||||| |||| ||||||| ||| || ||||||||||| |||||||||||||| || | || |||||||| |||||||||||||| |
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| T |
46635943 |
aaccagtggctttggtacatatgaatggttggttggttggtgagtaacactatattacttttatgccttgttataattgatacttaaagtatgctcttga |
46636042 |
T |
|
| Q |
845 |
tgatgt |
850 |
Q |
| |
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|||||| |
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| T |
46636043 |
tgatgt |
46636048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 46628699 - 46628758
Alignment:
| Q |
18 |
tgatttaggtaaccgtgttgaagtgagggttttgatgtttcagatcgtattgccaatttt |
77 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46628699 |
tgatttaggtaaccatgttgaagtgagggttttgatgtttcagatcgtattgccaatttt |
46628758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 46644602 - 46644546
Alignment:
| Q |
21 |
tttaggtaaccgtgttgaagtgagggttttgatgtttcagatcgtattgccaatttt |
77 |
Q |
| |
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||||||||||| ||||||||| |||||||| || ||||||||| ||||||||||||| |
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| T |
46644602 |
tttaggtaaccatgttgaagtaagggttttcatttttcagatcatattgccaatttt |
46644546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 15772145 - 15772090
Alignment:
| Q |
269 |
ctcatgttttaagtatgctttttgattatgctatctaatctacaagatttgagtta |
324 |
Q |
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| T |
15772145 |
ctcatgtttgaagtatgcatcttgattatgttatctaatctacatgatttgagtta |
15772090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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