View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_high_11 (Length: 512)
Name: NF13366_high_11
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 509
Target Start/End: Complemental strand, 29104543 - 29104066
Alignment:
| Q |
20 |
ggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaattccatcaataattccatcaa |
119 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104543 |
ggttagaggcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaattccatcaa------------ |
29104456 |
T |
|
| Q |
120 |
agaagcttgttttgctgagatttctaagaatggagctattttgcttttcagatttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatt |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104455 |
agaagcttgttttgctgagatttctaaggatggagctattttacttttaagatttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatt |
29104356 |
T |
|
| Q |
220 |
tttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgttaaatctcaagcat |
319 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29104355 |
tttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaacagcagtcgttaaatctcaagcat |
29104256 |
T |
|
| Q |
320 |
ataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcgg |
419 |
Q |
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| T |
29104255 |
ataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcgg |
29104156 |
T |
|
| Q |
420 |
cggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattcttcgacat |
509 |
Q |
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| T |
29104155 |
cggagttcattccctgacagaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattctttgacat |
29104066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 509
Target Start/End: Complemental strand, 29090282 - 29089805
Alignment:
| Q |
20 |
ggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaattccatcaataattccatcaa |
119 |
Q |
| |
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||||||| || ||||||||||||||||| || ||||| | |||||||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
29090282 |
ggttagaggcagttaagatctcagtgagaacactcttttctggagagagaaacctctgcgaacgaattttcgcttcgaattccatcag------------ |
29090195 |
T |
|
| Q |
120 |
agaagcttgttttgctgagatttctaaga-atggagctattttgcttttcagatttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagat |
218 |
Q |
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|||||||||||||| ||| ||||| |||| ||||||||| | | || || ||||||||||| ||||||| ||||||||||||| | ||||||||||| |
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| T |
29090194 |
agaagcttgttttggtgaaatttc-aagagatggagctactcttctcttacgatttcctgaattcgttgcgaaaacaaagaaatggacaccggagaagat |
29090096 |
T |
|
| Q |
219 |
ttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaatcaattttctcgtttaattcaatagcagtcgttaaatctcaagca |
318 |
Q |
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||| || |||||||||||||| || ||||||||| ||||||| |||||| ||||||| |||||||| || ||||||| | | ||||||||||||||| |
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| T |
29090095 |
tttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaatcgattttctctttcaattcaacctctggtgttaaatctcaagca |
29089996 |
T |
|
| Q |
319 |
tataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcg |
418 |
Q |
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|||||||| ||||| || | | || | |||| ||||| || | | ||||| ||||| |||| ||||||| ||||||||||| ||| ||||||| |
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| T |
29089995 |
tataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgctggcgaatttcg |
29089896 |
T |
|
| Q |
419 |
gcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattcttcgacat |
509 |
Q |
| |
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|||| |||||||||| |||| | |||||||||| ||||| | | ||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
29089895 |
gcggtattcattcccttacaacgcaaacaatgcaatatcttaccaagcttacagattacagcaacgtgctttctgaaatattcttcgacat |
29089805 |
T |
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