View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_high_17 (Length: 469)
Name: NF13366_high_17
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 43077016 - 43076580
Alignment:
| Q |
19 |
caccaaaccccacctctcacatcaacaaactaaggccataaaacagaatgtgacaaaattgtaatggaataataacaaaacnnnnnnnn---gtataata |
115 |
Q |
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| T |
43077016 |
caccaaaccccacctctcacatgaacaaaccaaggccataaaacagaatgtgacaaaattgtaatggaataataacaaaaacaaaaaaaaaagtataata |
43076917 |
T |
|
| Q |
116 |
gcacaagtacttacgtgtaaacccctgcatgaaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattgatgaaaa |
215 |
Q |
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| T |
43076916 |
gcacaagtacttacgtgtaaacccctgcatgaaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattgatgaaaa |
43076817 |
T |
|
| Q |
216 |
tcctcctttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaat |
315 |
Q |
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| T |
43076816 |
tcctcctttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaat |
43076717 |
T |
|
| Q |
316 |
ttcacccatttcatgaattgttgttctgattcttggactttggtcatattggcagacattccaaatccagtagaaggttttggtcgaagtccctttgtat |
415 |
Q |
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| T |
43076716 |
ttcacccatttcatgaattgttgttctgattcttggactttggtcatattggcagacattccaaatccagtagaaggttttggtcgaagtccctttgtat |
43076617 |
T |
|
| Q |
416 |
gacattgtgttacaatgggattttgtagaacaagaag |
452 |
Q |
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| T |
43076616 |
gacattgtgttacaatgggattttgtagaacaagaag |
43076580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 123 - 343
Target Start/End: Original strand, 33966669 - 33966889
Alignment:
| Q |
123 |
tacttacgtgtaaacccctgcatgaaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattg-atgaaaatcctcc |
221 |
Q |
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|||| |||||||||| |||||||||||||| ||||||||||| || | ||| ||| | ||||| ||||||||||| |||||||| || |||||| ||| |
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| T |
33966669 |
tactcacgtgtaaactcctgcatgaaccttgatgacaactctaacaagattgatggaaggaagagaatcaatggcattttgaattgtatcaaaatc-tcc |
33966767 |
T |
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| Q |
222 |
tttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcacc |
321 |
Q |
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| | || |||| ||||| |||||||||||||| ||| ||||||||||| || | | | ||||| |||||||||||||||||||| ||||| |
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| T |
33966768 |
aaaagaaggattcttatcaacgtgcaaagtataagaagcaaatagcttattttttgcagccttgtaaacagtgtgtttgagaccaccaacaaaactcacc |
33966867 |
T |
|
| Q |
322 |
catttcatgaattgttgttctg |
343 |
Q |
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|||||||||||||||||||||| |
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| T |
33966868 |
catttcatgaattgttgttctg |
33966889 |
T |
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Back To:
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