View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_high_18 (Length: 411)
Name: NF13366_high_18
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 34686923 - 34687306
Alignment:
| Q |
18 |
acaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgacaacactagaggggtctaattac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34686923 |
acaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgacaacactagaggggtctaattac |
34687022 |
T |
|
| Q |
118 |
ttctctgatttcccgaatatgattgaaccctcacctcaacaaaatgttgatctgcctctgctgaattatgataacatcatgaacaatgaaaatgaaaatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687023 |
ttctctgatttcccgaatatgattgaaccctcacctcaacaaaatgttgatctgcctctgctgaattatgataacatcatgaacaatgaaaatgaaaatg |
34687122 |
T |
|
| Q |
218 |
gaatctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687123 |
gaatctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttgg |
34687222 |
T |
|
| Q |
318 |
tgtcacgacaacttcaagtaatgatgattcaactgatcttgctcctctacctccggccattgacatgagtgcacctgatgatgt |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34687223 |
tgtcacgacaacttcaagtaatgatgattcaactgatcttgctcctctacctccggccattgacatgagtgcacctgttgatgt |
34687306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 34694849 - 34695233
Alignment:
| Q |
18 |
acaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgacaacactagaggggtctaattac |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |||||||| ||||||| |
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| T |
34694849 |
acaactacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattac |
34694948 |
T |
|
| Q |
118 |
ttctctgatttcccgaatatgattgaaccctcacctcaacaaaatgttgatctgcctctgctgaattatgataacatcatgaacaatgaaaatgaaaatg |
217 |
Q |
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||||||| ||| || ||||||| | || | | ||||||| ||||||||||||||||||| || ||||||||||||||||||||| ||| ||| |||||| |
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| T |
34694949 |
ttctctggttttccaaatatgagtcaatctttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatg |
34695048 |
T |
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| Q |
218 |
gaatctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttgg |
317 |
Q |
| |
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|||||| |||| || |||| |||||| |||||||||||||||||||||| |||| |||||||||| ||||| ||||||||||||||| |||||||||| |
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| T |
34695049 |
gaatctgctcaatcaatgacctttttgatcaagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttgg |
34695148 |
T |
|
| Q |
318 |
tgtcacgacaacttcaagtaatgatg---attcaactgatcttgctcctctacctccggccattgacatgagtgcacctgatgat |
399 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
34695149 |
tgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccattgacatgagtgcacctgctgat |
34695233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 245 - 371
Target Start/End: Original strand, 8285050 - 8285179
Alignment:
| Q |
245 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
344 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||||||||| | ||||| ||||| |||||||| |
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| T |
8285050 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
8285149 |
T |
|
| Q |
345 |
t---tcaactgatcttgctcctctacctcc |
371 |
Q |
| |
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| ||| ||||||||||||||| ||||| |
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| T |
8285150 |
tgagtcagttgatcttgctcctcttcctcc |
8285179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 8284799 - 8284874
Alignment:
| Q |
18 |
acaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgaca |
96 |
Q |
| |
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|||||||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
8284799 |
acaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaa---gtagtgcctaatgccatgaca |
8284874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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