View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_high_20 (Length: 399)
Name: NF13366_high_20
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 3650739 - 3651110
Alignment:
| Q |
10 |
aatatcttaccaagtaccaacatgtgcacaatcaacagaaagcaagaaacattatcattttcaagccccaaaagaccaaaaacgttcataaactcagaca |
109 |
Q |
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| T |
3650739 |
aatatcttaccaagtaccaacatgtgcacaatcaatagaaagcaagaaacattataattttcaagccccaaaagaccaaaaacgttcataaactcagaca |
3650838 |
T |
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| Q |
110 |
aaatataatataaaacctttttatagctaaaaaactaagcaggacgtagttgtagtccaaactactttaacggtttaattaattacacctgctatgatct |
209 |
Q |
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| T |
3650839 |
aaatataatataaaacctttttatagctaaaaaactaagcaggacgtagttgtagtccaaactactttaacggtttaactaattatacctgctatgatct |
3650938 |
T |
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| Q |
210 |
gtgacnnnnnnnnggacctaactagtggattgaacggtacttactcatatgatcttcatcttatgctactttttaataccatagccgcagtgatttagta |
309 |
Q |
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| T |
3650939 |
gtgac-aaaaaaaggacctaactagtggattgaacggtacttactcatatgatcttcatcttatgctactttttaataccatagccgcagtgacttagta |
3651037 |
T |
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| Q |
310 |
gtaaacggaacctggcaaatccgaaataatatagctttaataaaatattaaaaagagtaatctagttttttct |
382 |
Q |
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| T |
3651038 |
gtaaagggaacctggcaaatccgaaataatatagctttaataaaatatgaaaaagagtaatctagttttttct |
3651110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 3512797 - 3512737
Alignment:
| Q |
297 |
cagtgatttagtagtaaacggaacctggcaaatccg---aaataatatagctttaataaaa |
354 |
Q |
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| T |
3512797 |
cagtgatttagtaataaagggaacctggcaaatccgaataaataatatagctgtaataaaa |
3512737 |
T |
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