View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_high_22 (Length: 352)
Name: NF13366_high_22
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 100 - 269
Target Start/End: Complemental strand, 37171605 - 37171439
Alignment:
| Q |
100 |
ccagttcagcttttaattaa---ttattaaattaagtcatctatatatgccatgcctatgttcatagacatatagacaataataatacagaagaaagctt |
196 |
Q |
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| T |
37171605 |
ccagttcagcttttaattaaatattattaaattaagtcacctatatatgccatgcctatgttcatagacatatagacaataataatac---agaaagctt |
37171509 |
T |
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| Q |
197 |
ttnnnnnnngacaaaataataatgttcatctaaatatttatgtattttttcattttgtgaaaacataactaac |
269 |
Q |
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| T |
37171508 |
tt-aaaaaagacaaaataataatgttcatctaaatatttatgtattttttcattt--tgaaaacataactaac |
37171439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 37171738 - 37171649
Alignment:
| Q |
14 |
tcatcatgcattttggcagtgttcaaaaatgtgagtagggaagaagaaaagaaacaaagcaacgaatcttctccatttagtattatccag |
103 |
Q |
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| T |
37171738 |
tcataatgcattttggcagtgttcaaaaatgtgagtagggaagaagaaaagaaacaaagcaacgaatcttctccgtttagtattatccag |
37171649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 37171392 - 37171335
Alignment:
| Q |
279 |
caaaatccatccttcatcnnnnnnncaaaagtaaatatcaaacgacgacgtttgttgc |
336 |
Q |
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| T |
37171392 |
caaaatccatccttcatctttttttcaaaagtaaatatcaaacgacgacgtttgttgc |
37171335 |
T |
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