View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_high_25 (Length: 331)
Name: NF13366_high_25
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 149 - 315
Target Start/End: Original strand, 46262600 - 46262766
Alignment:
| Q |
149 |
tttcataatcttcacccatgttattttgttggaaagaatgtcttttgcatatcaaattcattcgaagatataaggaaattccactaattcataataaaga |
248 |
Q |
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| T |
46262600 |
tttcataatcttcagccatgttattatgttggaaagaatgtcttttgcatatcaaattcattcgaagatataaggaaattccactaattcataataaaga |
46262699 |
T |
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| Q |
249 |
tctataagttggtctatgtgataaggaattatttttgataaacaacaccatatttatcagagtattt |
315 |
Q |
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| T |
46262700 |
tctataagttggtctatgtgataaggaattatttttgataaacaacaccatatttatcagagtattt |
46262766 |
T |
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Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 46262461 - 46262554
Alignment:
| Q |
11 |
catcatcattcggagcaaaatcaacttttcctgcaaccatgtgaaatattcaagaacataaaactctctgaaacatgccaagtaactttgaccc |
104 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46262461 |
catcttcattcggagcaaaatcaacttttcctgcaaccatgtgaaatattcaagaacataaaactctctgaaacatgccaagtaactttgaccc |
46262554 |
T |
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