View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_high_28 (Length: 314)
Name: NF13366_high_28
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_28 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 1561 - 1269
Alignment:
| Q |
4 |
ggacaaagaatcatcgaaaatcatctgaactatagaatctcccttgtacttatcttggcacaacgaccgcgtcgtcactatcaccgagaaatgaacaaga |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1561 |
ggacaaagaatcatcgaaaatcatctgaactatagaatctcccttgtacttatcttggcacgacgaccgcgtcgtcactatcaccgagaaatgaacaaga |
1462 |
T |
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| Q |
104 |
tctgaaaccttaaataaattggggaaactgggacactggaatcaaacgctaaaggagtggattgtcggcggtatgcgaaagaagagaaaaaatagtttta |
203 |
Q |
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| T |
1461 |
tctgaaaccttaaataaattggggaaactggaacactggaatcaaacgctaaaggagtggattgtcggcggtatgcgaaagaagagaaaaaatagtttta |
1362 |
T |
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| Q |
204 |
agttttgatttggggaag--nnnnnnnnnggggaaattatgctctttttaatttggggttttggtgaaaatgagatggggggaaatgttggagc |
295 |
Q |
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| T |
1361 |
agttttgatttggggaagaaaaaaaaaagggggaaattatgctctttttaatttggggttttggtgaaaatgagatgggggg-aatgttggagc |
1269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 8163 - 7871
Alignment:
| Q |
4 |
ggacaaagaatcatcgaaaatcatctgaactatagaatctcccttgtacttatcttggcacaacgaccgcgtcgtcactatcaccgagaaatgaacaaga |
103 |
Q |
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| T |
8163 |
ggacaaagaatcatcgaaaatcatctgaactatagaatctcccttgtacttatcttggcacgacgaccgcgtcgtcactatcaccgagaaatgaacaaga |
8064 |
T |
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| Q |
104 |
tctgaaaccttaaataaattggggaaactgggacactggaatcaaacgctaaaggagtggattgtcggcggtatgcgaaagaagagaaaaaatagtttta |
203 |
Q |
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| T |
8063 |
tctgaaaccttaaataaattggggaaactggaacactggaatcaaacgctaaaggagtggattgtcggcggtatgcgaaagaagagaaaaaatagtttta |
7964 |
T |
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| Q |
204 |
agttttgatttggggaag--nnnnnnnnnggggaaattatgctctttttaatttggggttttggtgaaaatgagatggggggaaatgttggagc |
295 |
Q |
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| T |
7963 |
agttttgatttggggaagaaaaaaaaaagggggaaattatgctctttttaatttggggttttggtgaaaatgagatgggggg-aatgttggagc |
7871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 17059646 - 17059355
Alignment:
| Q |
4 |
ggacaaagaatcatcgaaaatcatctgaactatagaatctcccttgtacttatcttggcacaacgaccgcgtcgtcactatcaccgagaaatgaacaaga |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||| |
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| T |
17059646 |
ggacaaagaatcatcgaaaatcatctgaactatagaatctcccttgtacttatcttggcacaacgaccccctatgca-tatcaccgagaaatgaacaaga |
17059548 |
T |
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| Q |
104 |
tctgaaaccttaaataaattggggaaactgggacactggaatcaaacgctaaaggagtggattgtcggcggtatgcgaaagaagagaaaaaatagtttta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17059547 |
tctgaaaccttaaataaattggggaaactgggacactggaatcaaacgctaaaggagtggattgtcggcggtatgcgaaagaagagaaaaaatagtttta |
17059448 |
T |
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| Q |
204 |
agttttgatttgggg-aagnnnnnnnnnggggaaattatgctctttttaatttggggttttggtgaaaatgagatggggggaaatgttggagc |
295 |
Q |
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| T |
17059447 |
agttttgatttggggaaagaaaaaaaaaggggaaattatgctctttttaatttggggttttggtgaaaatgagatggggggaaatgttggagc |
17059355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 47323249 - 47323294
Alignment:
| Q |
249 |
ttaatttggggttttggtgaaaatgagatggggggaaatgttggagc |
295 |
Q |
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| T |
47323249 |
ttaatttggggctttgctgaaaatgagatgggggg-aatgttggagc |
47323294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 47338045 - 47338090
Alignment:
| Q |
249 |
ttaatttggggttttggtgaaaatgagatggggggaaatgttggagc |
295 |
Q |
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| T |
47338045 |
ttaatttggggctttgctgaaaatgagatgggggg-aatgttggagc |
47338090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 5523882 - 5523820
Alignment:
| Q |
4 |
ggacaaagaatcatcgaaaatcatctgaactatagaatctcccttgtacttatcttggcacaa |
66 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5523882 |
ggacaaagaatcataaaaaatcatctgaactatagaatctccattgtacttatcttggcacaa |
5523820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 24667218 - 24667180
Alignment:
| Q |
246 |
tttttaatttggggttttggtgaaaatgagatgggggga |
284 |
Q |
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| T |
24667218 |
tttttaatttggggatttggtgaaaatgagatggaggga |
24667180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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