View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13366_high_3 (Length: 762)
Name: NF13366_high_3
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 45 - 595
Target Start/End: Complemental strand, 16230890 - 16230341
Alignment:
| Q |
45 |
ctcactgggagtaggtgtgctgtcgatttccaccgagtttctgttgtctattatgccatatattatggagtctggctcttatgatatttgaccggcttct |
144 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
16230890 |
ctcattgggagtaggtgtgctgtcgatttccaccgagtttctgttgtctattatgccatagattatggagtctggctcatctgatatttgactggcttct |
16230791 |
T |
|
| Q |
145 |
aagcctttcgagagaatcattcattttactgttagaagtaaaatcataaatggaatagttccttttcttaccaactgttgtaattgaggactttgttagc |
244 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16230790 |
a-gcctttcgagagaatcattcattttagtgttagaagtaaaatcataaatggcatagttccttttctcaccgactgttgtaattgaggactttgttagc |
16230692 |
T |
|
| Q |
245 |
ttcccttgatcatctgttagctcatcgactttatttttgccatttgtccagaatttagttgtgtattgtatagcttttccatcagtaggaatagcatctt |
344 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
16230691 |
ttcctttgatcatctgttagctcatcgactttatttttgccatttgtccagaattcagttgtgtattgtatatctttcacatcagtaggaatagcatctt |
16230592 |
T |
|
| Q |
345 |
tggttagagtatgcgtactggaatttaatcaaatgtcgtggtcaaattcagttatgccttgcatatcctttccaccagtaggaataagatccatgtcgag |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16230591 |
tggttagagtatgcgtactggaatttaatcaaatgtcgtggtcgaattcagttatgccttgcatatcctttccaccagtaggagtaagatccatgtcgag |
16230492 |
T |
|
| Q |
445 |
atattgcatcctggatttcaaaccagtggcaattttcttcaggggcctggtggagtatggtgtgatgtggatatggtggaaatcttgtatttcagtgcac |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16230491 |
atattgcatcctggatttcaaaccagtggcaattttcttcaggggcctggtggagtatggtgtgatgtggatatggtggaaatcttgtatttcagtgcac |
16230392 |
T |
|
| Q |
545 |
ttgatcctgttccaaaagaacaaaactataccgagattgtggatgactcgc |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16230391 |
ttgatcctgttccaaaagaacaaaactatacagagattgtggatgactcgc |
16230341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 64 - 539
Target Start/End: Complemental strand, 34688638 - 34688165
Alignment:
| Q |
64 |
ctgtcgatttccaccgagtttctgttgtctattatgccatatattatggagtctggctcttatgatatttgaccggcttctaagcctttcgagagaatca |
163 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| | |||||| |||||||||||| ||| | |||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
34688638 |
ctgtcgatgtccacctagtttctgttgtctatcaggccatagattatggagtctttctcatctgatatttgaccagcttctaagcctttcgagggaatca |
34688539 |
T |
|
| Q |
164 |
ttcattttactgttagaagtaaaatcataaatggaatagttccttttcttaccaactgttgtaattgaggactttgttagcttcccttgatcatctgtta |
263 |
Q |
| |
|
|| ||| | | |||||||||||||||||| | | |||| |||||| | |||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34688538 |
tt----ttagtctcagaagtaaaatcataaattgcgtggttctttttctcagtaacttttgtaattgaggacttcgttagcttcccttgatcatctgtta |
34688443 |
T |
|
| Q |
264 |
---gctcatcgactttatttttgccatttgtccagaatttagttgtgtattgtatagcttttccatcagtaggaatagcatctttggttagagtatgcgt |
360 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||| ||| ||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
34688442 |
ttagctcattgactttctttttggcatttgtccaggattcggttgtgtttcgtatatcttttccataagtaggaatagcatctttggttagagtatgcat |
34688343 |
T |
|
| Q |
361 |
actggaatttaatcaaatgtcgtggtcaaattcagttatgccttgcatatcctttccaccagtaggaataagatccatgtcgagatattgcatcctggat |
460 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
34688342 |
actggaatttaatcaagtgtcgtggtcaaattcagttatgccttgcatatcctctccctcagtaggaatta-atccatgtcaagatattgcatcctggat |
34688244 |
T |
|
| Q |
461 |
ttcaaaccagtggcaattttcttcaggggcctggtggagtatggtgtgatgtggatatggtggaaatcttgtatttcag |
539 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34688243 |
ttcaaaccaggagcaattttcttcaggagcctggtggagtatgctgtgatgtggatatggtggaaatcttgtatttcag |
34688165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 64 - 539
Target Start/End: Complemental strand, 34711050 - 34710577
Alignment:
| Q |
64 |
ctgtcgatttccaccgagtttctgttgtctattatgccatatattatggagtctggctcttatgatatttgaccggcttctaagcctttcgagagaatca |
163 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| | |||||| |||||||||||| ||| | |||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
34711050 |
ctgtcgatgtccacctagtttctgttgtctatcaggccatagattatggagtctttctcatctgatatttgaccagcttctaagcctttcgagggaatca |
34710951 |
T |
|
| Q |
164 |
ttcattttactgttagaagtaaaatcataaatggaatagttccttttcttaccaactgttgtaattgaggactttgttagcttcccttgatcatctgtta |
263 |
Q |
| |
|
|| ||| | | |||||||||||||||||| | | |||| |||||| | |||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34710950 |
tt----ttagtctcagaagtaaaatcataaattgcgtggttctttttctcagtaacttttgtaattgaggacttcgttagcttcccttgatcatctgtta |
34710855 |
T |
|
| Q |
264 |
---gctcatcgactttatttttgccatttgtccagaatttagttgtgtattgtatagcttttccatcagtaggaatagcatctttggttagagtatgcgt |
360 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||| ||| ||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
34710854 |
ttagctcattgactttctttttggcatttgtccaggattcggttgtgtttcgtatatcttttccataagtaggaatagcatctttggttagagtatgcat |
34710755 |
T |
|
| Q |
361 |
actggaatttaatcaaatgtcgtggtcaaattcagttatgccttgcatatcctttccaccagtaggaataagatccatgtcgagatattgcatcctggat |
460 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
34710754 |
actggaatttaatcaagtgtcgtggtcaaattcagttatgccttgcatatcctctccctcagtaggaatta-atccatgtcaagatattgcatcctggat |
34710656 |
T |
|
| Q |
461 |
ttcaaaccagtggcaattttcttcaggggcctggtggagtatggtgtgatgtggatatggtggaaatcttgtatttcag |
539 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34710655 |
ttcaaaccaggagcaattttcttcaggagcctggtggagtatgctgtgatgtggatatggtggaaatcttgtatttcag |
34710577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 483 - 592
Target Start/End: Complemental strand, 28914176 - 28914067
Alignment:
| Q |
483 |
tcaggggcctggtggagtatggtgtgatgtggatatggtggaaatcttgtatttcagtgcacttgatcctgttccaaaagaacaaaactataccgagatt |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||| ||| ||||| |||||| ||| || ||||| ||||||||| ||||||| |||||| |
|
|
| T |
28914176 |
tcaggggcctggtggagtatggtgtgatgtagatgtggtggaattctcatattttggtgcacctgaaccagttccgaaagaacaacactatacagagatt |
28914077 |
T |
|
| Q |
583 |
gtggatgact |
592 |
Q |
| |
|
|||||||||| |
|
|
| T |
28914076 |
gtggatgact |
28914067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 35564848 - 35565035
Alignment:
| Q |
53 |
gagtaggtgtgctgtcgatttccaccgagtttctgttgtctattatgccatatattatggagtctggctcttatgatatttgaccggcttctaagccttt |
152 |
Q |
| |
|
|||||| ||| ||||| ||||||| | |||||||| |||||| |||| ||| || |||||||||||||| | |||||||||||| ||| || ||||||| |
|
|
| T |
35564848 |
gagtagatgtactgtcaatttccaatgtgtttctgtcgtctatcatgcaatagatgatggagtctggctcatctgatatttgaccagctccttagccttt |
35564947 |
T |
|
| Q |
153 |
cgagagaatcattcattttactgttagaagtaaaatcataaatgg----aatagttccttttcttaccaactgttgtaattgaggactttgt |
240 |
Q |
| |
|
| ||||| |||||||| | |||||||| ||||||||||| | ||||||| |||||| || ||||| ||||| |||||||||||| |
|
|
| T |
35564948 |
catgagaa----tcattttagtcttagaagtcaaatcataaatcgcatatatagttctttttctcactaactgctgtaaatgaggactttgt |
35565035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 35546948 - 35547075
Alignment:
| Q |
109 |
atggagtctggctcttatgatatttgaccggcttctaagcctttcgagagaatcattcattttactgttagaagtaaaatcataaatggaatagttcctt |
208 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| || |||||||| |||||||||| ||| | |||||||| ||||||||||| ||||||| || |
|
|
| T |
35546948 |
atggagtctggctcatctgatatttgaccagctccttagcctttcatgagaatcatt----ttagtcttagaagtcaaatcataaatcatatagttcttt |
35547043 |
T |
|
| Q |
209 |
ttcttaccaactgttgtaattgaggactttgt |
240 |
Q |
| |
|
|||| | |||| ||||||||||||||||||| |
|
|
| T |
35547044 |
ttctcagtaacttttgtaattgaggactttgt |
35547075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 725
Target Start/End: Complemental strand, 34688014 - 34687976
Alignment:
| Q |
687 |
atatatcacatatgtgatgattaaggaaacatgtatgtc |
725 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34688014 |
atatatcacatatgtgatgattaaggaagcatgtatgtc |
34687976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 725
Target Start/End: Complemental strand, 34710426 - 34710388
Alignment:
| Q |
687 |
atatatcacatatgtgatgattaaggaaacatgtatgtc |
725 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34710426 |
atatatcacatatgtgatgattaaggaagcatgtatgtc |
34710388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 631
Target Start/End: Complemental strand, 16230321 - 16230290
Alignment:
| Q |
600 |
tggttcaggatctcaagtgtttctttgctctt |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16230321 |
tggttcaggatctcaagtgtttctttgctctt |
16230290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 327 - 459
Target Start/End: Complemental strand, 46519909 - 46519777
Alignment:
| Q |
327 |
cagtaggaatagcatctttggttagagtatgcgtactggaatttaatcaaatgtcgtggtcaaattcagttatgccttgcatatcctttccaccagtagg |
426 |
Q |
| |
|
|||||||||||| || ||||| |||||| || ||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||| |||| |||||| |
|
|
| T |
46519909 |
cagtaggaataggctccttggtgagagtaggcatactggaatttaatctgatgccgtggtcaaattcagttctgccttgtatatcctctccattagtagg |
46519810 |
T |
|
| Q |
427 |
aataagatccatgtcgagatattgcatcctgga |
459 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
46519809 |
aataggatccatgtcgagatattgcatcctgga |
46519777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 90 - 298
Target Start/End: Complemental strand, 46520115 - 46519911
Alignment:
| Q |
90 |
gtctattatgccatatattatggagtctggctcttatgatatttgaccggcttctaagcctttcgagagaatcattcattttactgttagaagtaaaatc |
189 |
Q |
| |
|
|||||| |||||||| |||| ||| |||||||| ||||||||| |||| |||||||||||||||||| |||||||| ||| | |||||| ||||| |
|
|
| T |
46520115 |
gtctatcatgccatagattagggaatctggctcatatgatattcgaccagcttctaagcctttcgagggaatcatt----ttaggctcagaagtcaaatc |
46520020 |
T |
|
| Q |
190 |
ataaatggaatagttccttttcttaccaactgttgtaattgaggactttgttagcttcccttgatcatctgttagctcatcgactttatttttgccattt |
289 |
Q |
| |
|
|||||| |||||| ||||| || ||| ||||||| ||||||||||||||||||| |||||||| ||||| ||||||| |||| |||||| ||||| |
|
|
| T |
46520019 |
ataaatcacgtagttcgttttcccactaacagttgtaactgaggactttgttagcttctcttgatcaaatgttacctcatcggctttctttttggcattt |
46519920 |
T |
|
| Q |
290 |
gtccagaat |
298 |
Q |
| |
|
||||||||| |
|
|
| T |
46519919 |
gtccagaat |
46519911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University