View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13366_high_33 (Length: 250)

Name: NF13366_high_33
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13366_high_33
NF13366_high_33
[»] chr7 (4 HSPs)
chr7 (15-250)||(36282105-36282337)
chr7 (15-58)||(25558143-25558186)
chr7 (19-58)||(30948631-30948670)
chr7 (14-56)||(22293508-22293550)
[»] chr8 (7 HSPs)
chr8 (15-58)||(20290005-20290048)
chr8 (15-58)||(21076635-21076678)
chr8 (15-60)||(17630525-17630569)
chr8 (15-58)||(29055231-29055274)
chr8 (14-58)||(10861176-10861220)
chr8 (15-58)||(17068841-17068885)
chr8 (15-58)||(17579388-17579432)
[»] chr3 (2 HSPs)
chr3 (14-56)||(4534115-4534157)
chr3 (16-58)||(39674790-39674832)
[»] scaffold0017 (1 HSPs)
scaffold0017 (15-58)||(37418-37461)
[»] chr4 (2 HSPs)
chr4 (15-58)||(32761195-32761238)
chr4 (18-57)||(54260737-54260776)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 36282105 - 36282337
Alignment:
Q  15 tatcgtatcgtatcagtatcgtgtcaggtattggggcttcatagttgatatcccttcattgccaactatgccacatgaagagagtcggagtaatacataa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36282105 tatcgtatcgtatcagtatcgtgtcaggtattggggcttcatagttgatatcccttcattgccaactatgccacatgaagagagtcggagtaatacataa 36282204  T
Q  115 gttttatttacctgcctcctaaagtaactttacaccagtaaataaagcttgaatatcaacattagaatatttgatatctccacaccggcaaagaaatcgg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  36282205 gttttatttacctgcctcctaaagtaactttacaccagtaaataaagcttgaatatcaacattagaatatttgatatctcca---cggcaaagaaatcgg 36282301  T
Q  215 gaagaaaaatttcattgtgcttatagattggtcaaa 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  36282302 gaagaaaaatttcattgtgcttatagattggtcaaa 36282337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 25558143 - 25558186
Alignment:
Q  15 tatcgtatcgtatcagtatcgtgtcaggtattggggcttcatag 58  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||    
T  25558143 tatcgtatcgtatcggtatcgtgtcgggtatcggggcttcatag 25558186  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 30948631 - 30948670
Alignment:
Q  19 gtatcgtatcagtatcgtgtcaggtattggggcttcatag 58  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  30948631 gtatcgtatcggtatcgtgtcaggtatcggggcttcatag 30948670  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 22293508 - 22293550
Alignment:
Q  14 atatcgtatcgtatcagtatcgtgtcaggtattggggcttcat 56  Q
    ||||||||||||||| | |||||||||||||||||| ||||||    
T  22293508 atatcgtatcgtatccgcatcgtgtcaggtattgggacttcat 22293550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 20290005 - 20290048
Alignment:
Q  15 tatcgtatcgtatcagtatcgtgtcaggtattggggcttcatag 58  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  20290005 tatcgtatcgtatcggtatcgtgtcaggtatcggggcttcatag 20290048  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 21076635 - 21076678
Alignment:
Q  15 tatcgtatcgtatcagtatcgtgtcaggtattggggcttcatag 58  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  21076635 tatcgtatcgtatcggtatcgtgtcaggtatcggggcttcatag 21076678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 17630569 - 17630525
Alignment:
Q  15 tatcgtatcgtatcagtatcgtgtcaggtattggggcttcatagtt 60  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||    
T  17630569 tatcgtatcg-atcggtatcgtgtcaggtattggggcttcatagtt 17630525  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 29055231 - 29055274
Alignment:
Q  15 tatcgtatcgtatcagtatcgtgtcaggtattggggcttcatag 58  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||    
T  29055231 tatcgtattgtatcggtatcgtgtcaggtatcggggcttcatag 29055274  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 10861220 - 10861176
Alignment:
Q  14 atatcgtatcgtatcagtatcgtgtcaggtattggggcttcatag 58  Q
    ||||||||||||||| ||||| ||||||||||  |||||||||||    
T  10861220 atatcgtatcgtatcggtatcatgtcaggtatcagggcttcatag 10861176  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 17068841 - 17068885
Alignment:
Q  15 tatcgtatcgtatcagtatcgtgtcaggtat-tggggcttcatag 58  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||    
T  17068841 tatcgtatcgtatcggtatcgtgtcaggtatcgggggcttcatag 17068885  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 17579432 - 17579388
Alignment:
Q  15 tatcgtatcgtatcagtatcgtgtcaggtat-tggggcttcatag 58  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||    
T  17579432 tatcgtatcgtatcggtatcgtgtcaggtatcgggggcttcatag 17579388  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 4534115 - 4534157
Alignment:
Q  14 atatcgtatcgtatcagtatcgtgtcaggtattggggcttcat 56  Q
    ||||||||||||||| |||||||||||||||| ||||||||||    
T  4534115 atatcgtatcgtatcggtatcgtgtcaggtatcggggcttcat 4534157  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 39674790 - 39674832
Alignment:
Q  16 atcgtatcgtatcagtatcgtgtcaggtattggggcttcatag 58  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  39674790 atcgtatcgtatcggtatcgtgtcaggtatcggggcttcatag 39674832  T

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Target: scaffold0017 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 37461 - 37418
Alignment:
Q  15 tatcgtatcgtatcagtatcgtgtcaggtattggggcttcatag 58  Q
    |||||||||||||| |||||||||||||||| || |||||||||    
T  37461 tatcgtatcgtatcggtatcgtgtcaggtatcggagcttcatag 37418  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 32761195 - 32761238
Alignment:
Q  15 tatcgtatcgtatcagtatcgtgtcaggtattggggcttcatag 58  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||    
T  32761195 tatcgtatcgtatccgtatcgtgttaggtatcggggcttcatag 32761238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 54260737 - 54260776
Alignment:
Q  18 cgtatcgtatcagtatcgtgtcaggtattggggcttcata 57  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  54260737 cgtatcgtatcagtatcgtgtcaggtatcggtgcttcata 54260776  T

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