View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_high_34 (Length: 247)
Name: NF13366_high_34
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 25539644 - 25539871
Alignment:
| Q |
1 |
catactcttgaagatggaaaattgttggttgacacagaaacctttgaccatggttctgtgtgtttaattcctaatccataaaacttcacagtgttctaat |
100 |
Q |
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| T |
25539644 |
catactcttgaagatggagaattgttggttgacacagaaacctttgaccatggttctgtgtgtttaattcctaatccataaaacttcacagtgttctaat |
25539743 |
T |
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| Q |
101 |
gtttaggaagcagttgcttcatttgagaagaaatattacttttgctgcaaatgtgataagtgtcttacattttaacataaacaagaaaattaacaacaaa |
200 |
Q |
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| T |
25539744 |
gtttaggaagcagttgcttcatttgagaagaaatattacttttgctgcaaatgtgataagtgtcttacattttaacataaacaagaaaattaacaacaaa |
25539843 |
T |
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| Q |
201 |
aaatcatggataaaacaaggtcacaagg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25539844 |
aaatcatggataaaacaaggtcacaagg |
25539871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 25517778 - 25517697
Alignment:
| Q |
129 |
agaaatattacttttgctgcaaatgtgataagtgtcttacattttaacataaacaag-aaaattaacaacaaaaaatcatggat |
211 |
Q |
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| T |
25517778 |
agaaatattacttttgctgcaaatgtgagaagtgtcttaca-tttaacataaacaagcaaatttaacaac-aaaaatcatggat |
25517697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 25540849 - 25540916
Alignment:
| Q |
105 |
aggaagcagttgcttcatttgagaagaaatattacttttgctgcaaatgtgataagtgtcttacattt |
172 |
Q |
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| T |
25540849 |
aggaagcagttccttcattagacaagaaatactacttttgctgcatatgtgagaggagtcttacattt |
25540916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 25526245 - 25526380
Alignment:
| Q |
30 |
tgacacagaaacctttgaccatggttctgtgtgtttaattcctaatccataaaacttcacagtgttctaatgttt---aggaagcagttgcttcatttga |
126 |
Q |
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||||||||||||| |||||| || || |||| |||| |||||||||| | |||||| || ||||||||||||| |||| |||||| ||| |||||| |
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| T |
25526245 |
tgacacagaaaccattgaccctgattttgtgcgttttattcctaatcaaagaaactt-actctgttctaatgtttataaggatgcagtttctttatttga |
25526343 |
T |
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| Q |
127 |
gaagaaatattacttttgctgcaaatgtgataagtgtcttac |
168 |
Q |
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| T |
25526344 |
gaagaa-----acttttgatgcaaatgtgagaggtgtcttac |
25526380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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