View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_high_4 (Length: 721)
Name: NF13366_high_4
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 307 - 706
Target Start/End: Original strand, 43603921 - 43604330
Alignment:
| Q |
307 |
acaggctcagttacttaaaagttacccttcaagattaaggttcatgagcattcagagcatatctagtgcaattcagtcatttgtcattgctatagctttt |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43603921 |
acaggctcagttacttaaaagttacccttcaagattaaggttcatgagcattcagagcatatctagtgcaattcagtcatttatcattgctatagctttt |
43604020 |
T |
|
| Q |
407 |
gaaagagattttgagcagtggaagttgggctggaacatgagactgttagctgctgtttactgtgtaagtattaaattaaagtaacacactaaacatgtta |
506 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43604021 |
gaaagagattttgagcagtggaagttgggttggaacatgagactgttagctgctgtttactgtgtaagtattaaattaaagtaacacgctaaacatgtta |
43604120 |
T |
|
| Q |
507 |
tatttatgcacactcttttcaat-agattattgtgcatattgatgctggcaaga---------atgttttttgatgtgtatattgtcctaattcctaaat |
596 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43604121 |
tatttatgcacactcttttcaataagattattgtgcattttgatgctggcaagaatgttagtgatgttttttgatgtgtatattgtcctaattcctaaat |
43604220 |
T |
|
| Q |
597 |
gaaacagggggtactagtgactggagtttcatattacctgcaagcattggtgattgagaagagaggaccagttttctcagcaacttggaatccactgagt |
696 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604221 |
gaaacagggggtactagtgactggagtttcatattacctgcaagcattggtgattgagaagagaggaccagttttctcagcaacttggaatccactgagt |
43604320 |
T |
|
| Q |
697 |
tttataattg |
706 |
Q |
| |
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|||||||||| |
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| T |
43604321 |
tttataattg |
43604330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 43603661 - 43603851
Alignment:
| Q |
8 |
tggacatcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggattttgggttctttcctcttgttcctagccacagtcatgtgg |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603661 |
tggatatcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggattttgggttctttcctcttgttcctagccacagtcatgtgg |
43603760 |
T |
|
| Q |
108 |
agtttgtggattgtatttcaggtaccgtttatttaattccaagttgggatataattaagatctagaatgatgaaacatttaggtgtgacat |
198 |
Q |
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| T |
43603761 |
agtttgtggattgtatttcaggtaccgtttatttaattccaagttgggatataattaagatctagaatgatgaaacatttaggtgtgacat |
43603851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 307 - 492
Target Start/End: Original strand, 43610319 - 43610503
Alignment:
| Q |
307 |
acaggctcagttacttaaaagttacccttcaagattaaggttcatgagcattcagagcatatctagtgcaattcagtcatttgtcattgctatagctttt |
406 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
43610319 |
acaggctcagttgcttaaaacttacccttcaaagctaaggttcatgagcattcaaagcctatcaagtgcaattcagtcatttgtcattgctatagctttt |
43610418 |
T |
|
| Q |
407 |
gaaagagattttgagcagtggaagttgggctggaacatgagactgttagctgctgtttactgtgtaagtattaaattaaagtaaca |
492 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| || ||||||||||||| |
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| T |
43610419 |
gaaagagatattgagcagtggaagttgggttggaacatgagactgctagccgttgtttactgtgtaagtctt-aattaaagtaaca |
43610503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 309 - 491
Target Start/End: Original strand, 43617059 - 43617240
Alignment:
| Q |
309 |
aggctcagttacttaaaagttacccttcaagattaaggttcatgagcattcagagcatatctagtgcaattcagtcatttgtcattgctatagcttttga |
408 |
Q |
| |
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|||||||||||||||| || |||||||||| ||| |||||| | |||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
43617059 |
aggctcagttacttaagagctacccttcaaagctaaagttcataaccattcagagcctatcaagtgcaattcagtcatttgtcattgccatagcttttga |
43617158 |
T |
|
| Q |
409 |
aagagattttgagcagtggaagttgggctggaacatgagactgttagctgctgtttactgtgtaagtattaaattaaagtaac |
491 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||||||||| | |||| |||||||||||||||| || |||||||||||| |
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| T |
43617159 |
aagagatattgagcagtggaagttaggttggaacatgagactgctggctgttgtttactgtgtaagtgtt-aattaaagtaac |
43617240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 592 - 706
Target Start/End: Original strand, 43617562 - 43617676
Alignment:
| Q |
592 |
taaatgaaacagggggtactagtgactggagtttcatattacctgcaagcattggtgattgagaagagaggaccagttttctcagcaacttggaatccac |
691 |
Q |
| |
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|||||| |||||||| ||||||||||| |||| |||||||| ||||||||||||||||||| || | ||||||||||||| |||||||||||||||||| |
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| T |
43617562 |
taaatgtaacaggggacactagtgactgcagttgcatattacttgcaagcattggtgattgataaaaaaggaccagttttcccagcaacttggaatccac |
43617661 |
T |
|
| Q |
692 |
tgagttttataattg |
706 |
Q |
| |
|
||||||||||||||| |
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| T |
43617662 |
tgagttttataattg |
43617676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 43610070 - 43610193
Alignment:
| Q |
8 |
tggacatcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggattttgggttctttcctcttgttcctagccacagtcatgtgg |
107 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| | || | | ||| |
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| T |
43610070 |
tggatatcatcacaactatcaacaacatgaagatagtgaatcatatgacaaaaaatggattttgggttctttactcttgttcctaactaccattacctgg |
43610169 |
T |
|
| Q |
108 |
agtttgtggattgtatttcaggta |
131 |
Q |
| |
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||||||||||||||| |||||||| |
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| T |
43610170 |
agtttgtggattgtacttcaggta |
43610193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 589 - 706
Target Start/End: Original strand, 43610678 - 43610795
Alignment:
| Q |
589 |
tcctaaatgaaacagggggtactagtgactggagtttcatattacctgcaagcattggtgattgagaagagaggaccagttttctcagcaacttggaatc |
688 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||| | || ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| | |
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| T |
43610678 |
tcctaaatgtaacaggggacactagtgactgcagttgcctactacttgcaagcattggtgattgagaagaaaggaccagttttcccagcaacttggaccc |
43610777 |
T |
|
| Q |
689 |
cactgagttttataattg |
706 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
43610778 |
caatgagttttataattg |
43610795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 43616695 - 43616832
Alignment:
| Q |
8 |
tggacatcatcacaactatcaacaacataaagatagtgaatcacatgagaaaaaatggattttgggttctttcctcttgttcctagccacagtcatgtgg |
107 |
Q |
| |
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|||| ||||||||||| ||||| ||||| || || ||||||| |||| |||||||||||||||||| |||| ||||||||||||| ||| |||||||| |
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| T |
43616695 |
tggatatcatcacaacaatcaagaacatgaatatcatgaatcatatgacaaaaaatggattttgggtgctttactcttgttcctaggcaccatcatgtgg |
43616794 |
T |
|
| Q |
108 |
agtttgtggattgtatttcaggtaccgtttatttaatt |
145 |
Q |
| |
|
|| |||||| ||||| |||||||||| || |||||||| |
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|
| T |
43616795 |
agcttgtggcttgtacttcaggtaccattaatttaatt |
43616832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 43603852 - 43603898
Alignment:
| Q |
235 |
ttattattatatgaacacacatacaatactcacactgatcctgatcc |
281 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603852 |
ttattattatatgaacacacatacaatactcacactgatcctgatcc |
43603898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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