View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_1 (Length: 1064)
Name: NF13366_low_1
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 395 - 1050
Target Start/End: Original strand, 4555003 - 4555649
Alignment:
| Q |
395 |
tgaacataagtaaataattttacactcaattcatttttaatcaaaatactttcgtcaaaatcaatttttgcccctgcaaaacaaaacacactaattagta |
494 |
Q |
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| T |
4555003 |
tgaacataagtaaataattttacactcaactcatttttaatcaaaatactttcgtcaaaatcaatttttgcccctgcaaaacaaaacacactaattagta |
4555102 |
T |
|
| Q |
495 |
attactacatgttttcttattgccaaatcactaatactactctatgaatcttcatataaatatgtaatcagatggctcccagttacaattcagttaagaa |
594 |
Q |
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| T |
4555103 |
attactacatgttttcttattgccaaatcactaatactactctatgaatcttcatataaatatgtaatcagatggctcccagttacaattcagttaagaa |
4555202 |
T |
|
| Q |
595 |
ggacaccacagtaagcactagtaataaaactaagagtgccatgatgaaggaaagggatgaaaagtcatatgtgaaattaacttcccaacaagtatggcag |
694 |
Q |
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| T |
4555203 |
ggacaccacagtaagcactagtaataaaactaagagtgccatgatgaaggaaagggatgaaaagtcatatgtgaaattaacttcccaacaagtatggcag |
4555302 |
T |
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| Q |
695 |
aaaagtggaagttgtccaaaaggaacaatacctgttcgaagaatacgaaagagagagcttctcaaggctccatccattgatgaatttggaagaaagaaac |
794 |
Q |
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| T |
4555303 |
aaaagtggaagttgtccaaagggaacaatacctgttcgaagaatacgaaagagagagcttctcaaggctccatccattgatgaatttggaagaaagaaac |
4555402 |
T |
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| Q |
795 |
caagcttcagaaaagttaatcagcttaatcagaacgttgattcctttgtactgctaacaaatcactctgtaagtttctatgcatgctacagctacaaaat |
894 |
Q |
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| T |
4555403 |
caagcttcagaaaag---------ttaatcagaatgttgattcctttgtactgctaacaaatcactctgtaagtttctatgcatgctacagctaaaaaat |
4555493 |
T |
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| Q |
895 |
gttggatcatgatttgacattatttctcaaacacaattttttattatacattatgctaattaaatcagacgatttatattctgactttagaaaattgaat |
994 |
Q |
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| T |
4555494 |
gttggatcatgatttgacattatttctcaaacacaattttttattatacattatgctaattaaatcagacgatttatattctgactttagaaaattgaat |
4555593 |
T |
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| Q |
995 |
tcaaaatctatactcgaaatgagtcgtctgatttttatctaattaacgatgatgtc |
1050 |
Q |
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||||||| |||||||| ||||||||||||||| |||||||||||||| || ||||| |
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| T |
4555594 |
tcaaaatttatactcggaatgagtcgtctgatctttatctaattaacaataatgtc |
4555649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 73 - 319
Target Start/End: Original strand, 4554669 - 4554915
Alignment:
| Q |
73 |
acaatacttttgtgttaatttatagatgatacactagttgcttgtttgggctttcttttgtgaaagatcaatgtgattttaaaagtatgaaattaatttt |
172 |
Q |
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| T |
4554669 |
acaatacttttgtgttaatttatagatgatacactagttgcttgtttgggctttcttttgtgaaagatcaatgtgattttaaaagtatgaaattaatttt |
4554768 |
T |
|
| Q |
173 |
tacattctattttgtaaccatgtaattggtgcgaagtatccacggacttgtaccgattactaatctccgcatggaacttgcctggccaactttgacatgt |
272 |
Q |
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| T |
4554769 |
tacattctattttgtaaccatgtaattggtgcgaagtatccacggacttgtaccgattactaatctccgcatggaacttgcctggccagctttgacatgt |
4554868 |
T |
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| Q |
273 |
ttaagtgttcttgagtaaattgctttggacatccaaagtttattcta |
319 |
Q |
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| T |
4554869 |
ttaagtgttcttgagtaaattgctttggacatccaaagtttattcta |
4554915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 688 - 745
Target Start/End: Complemental strand, 47947941 - 47947884
Alignment:
| Q |
688 |
atggcagaaaagtggaagttgtccaaaaggaacaatacctgttcgaagaatacgaaag |
745 |
Q |
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| T |
47947941 |
atggcagaaaagtggaagttgtccaaaagaaactgtacctattcgtagaattcgaaag |
47947884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 43052348 - 43052389
Alignment:
| Q |
180 |
tattttgtaaccatgtaattggtgcgaagtatccacggactt |
221 |
Q |
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| T |
43052348 |
tatttggtaaccatgtcattggtgcgaagtatccactgactt |
43052389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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