View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13366_low_10 (Length: 567)

Name: NF13366_low_10
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13366_low_10
NF13366_low_10
[»] chr2 (33 HSPs)
chr2 (251-552)||(10334494-10334797)
chr2 (1-235)||(10334836-10335070)
chr2 (9-501)||(10351024-10351495)
chr2 (9-212)||(10370961-10371168)
chr2 (9-209)||(10346837-10347037)
chr2 (13-209)||(9318688-9318892)
chr2 (68-501)||(10340312-10340730)
chr2 (304-493)||(10346562-10346750)
chr2 (9-202)||(8574309-8574502)
chr2 (9-181)||(9285035-9285207)
chr2 (9-209)||(9326552-9326758)
chr2 (389-501)||(10370773-10370884)
chr2 (21-209)||(9287732-9287924)
chr2 (9-203)||(11425224-11425424)
chr2 (9-206)||(9291102-9291299)
chr2 (10-209)||(9076500-9076700)
chr2 (56-209)||(9271847-9272003)
chr2 (56-207)||(9068948-9069096)
chr2 (59-209)||(9273194-9273344)
chr2 (354-443)||(9300814-9300899)
chr2 (59-209)||(9315210-9315359)
chr2 (20-157)||(9062039-9062182)
chr2 (332-443)||(9287490-9287597)
chr2 (324-409)||(9271656-9271741)
chr2 (251-303)||(10370887-10370939)
chr2 (499-552)||(25515743-25515796)
chr2 (10-207)||(9363617-9363820)
chr2 (9-119)||(7116884-7117003)
chr2 (9-94)||(12019735-12019824)
chr2 (156-209)||(7117004-7117057)
chr2 (40-94)||(9295528-9295582)
chr2 (9-50)||(9068886-9068927)
chr2 (62-94)||(8580696-8580728)
[»] chr4 (3 HSPs)
chr4 (9-501)||(26573815-26574297)
chr4 (502-552)||(41933560-41933610)
chr4 (313-381)||(560526-560591)
[»] chr8 (3 HSPs)
chr8 (9-170)||(41968246-41968408)
chr8 (499-552)||(35551751-35551804)
chr8 (499-552)||(39491192-39491245)
[»] chr3 (3 HSPs)
chr3 (8-209)||(37461536-37461742)
chr3 (332-439)||(39426803-39426906)
chr3 (325-391)||(39426149-39426215)
[»] chr6 (1 HSPs)
chr6 (324-501)||(10857004-10857170)
[»] scaffold0667 (1 HSPs)
scaffold0667 (13-188)||(1713-1891)
[»] chr7 (3 HSPs)
chr7 (499-552)||(556580-556633)
chr7 (342-443)||(45241679-45241776)
chr7 (448-501)||(45241315-45241368)
[»] chr5 (1 HSPs)
chr5 (333-432)||(36223632-36223728)
[»] scaffold0238 (1 HSPs)
scaffold0238 (499-552)||(18847-18900)
[»] chr1 (5 HSPs)
chr1 (9-106)||(29444190-29444290)
chr1 (9-96)||(29454197-29454287)
chr1 (9-96)||(29422442-29422532)
chr1 (143-207)||(29462264-29462328)
chr1 (9-50)||(29462160-29462201)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 251 - 552
Target Start/End: Complemental strand, 10334797 - 10334494
Alignment:
Q  251 gtgtctaagatcacagttatccttcttgtgtaaaactgttacatcactatttgtagtggagctgataaaagttattttggtataggcatgcgaagcatga 350  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10334797 gtgtctaagatcacagttatccctcttgtgtaaaactgttacatcattatttgtagtggagctgataaaagttattttggtataggcatgcgaagcatga 10334698  T
Q  351 gcatcatatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgta--tgtgtttttgaactctaaaatgaggcaagcattgtat 448  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  10334697 gcatcatatcaccatcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatttgtgtttttgaactctaaaatgaggcaagcattgtat 10334598  T
Q  449 ttcttatttctgcagggaaggaagaatttttcaacagggcttctagtctatagtttttgagcaatgaaaaaactggaaaattgatgtttctgtttctgcc 548  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||    
T  10334597 ttcttatttctgcagggaaggaagaatttttgaacagggcttctagtctatagtttttgaccgatgaaaaaactggaaaattgatgtttctgtttttgcc 10334498  T
Q  549 tatg 552  Q
    ||||    
T  10334497 tatg 10334494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10335070 - 10334836
Alignment:
Q  1 tatcgaacattcttttgtgatattgttgaacttacttttatgagattcatctttctccacagggatgacttcttgtcccaaggatttaaattgaaactct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| |    
T  10335070 tatcgaacattcttttgtgatattgttgaacttacttttatgagattcatttttctccacagggatgacttcttgtcccgaggatttaaattgagactgt 10334971  T
Q  101 aagggatgaaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaa 200  Q
    |||||||| ||||||| || ||  | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10334970 aagggatggaaggaagaacgtgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggtttgtaggaaaggttgaa 10334871  T
Q  201 ttgataatgttgtaggcgtacccattttatccctc 235  Q
    |||||||||||||||||||||||||||||||||||    
T  10334870 ttgataatgttgtaggcgtacccattttatccctc 10334836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 9 - 501
Target Start/End: Complemental strand, 10351495 - 10351024
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatctttctccacagggatgacttcttgtcccaaggatttaaattgaaactctaagggatg 108  Q
    |||||||||||||||| |||||||| ||||   | ||||||| ||| |||||||||| |||||||||||   |||||||||||||| | | |||||||      
T  10351495 attcttttgtgatatttttgaactt-cttt---gtgattcattttt-tccacagggacgacttcttgtctggaggatttaaattgagattgtaaggga-- 10351403  T
Q  109 aaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattgataat 208  Q
      |||||||||| |  | |||||||||||| |||||||| | ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  10351402 --aggaaggaccagtgaagtgcagctgaaataggatgcttctgttgtttcttgtgatggaattgctcaccttggtttgtaggaaaggttgaattgataat 10351305  T
Q  209 gttgtaggcgtacccatttt-atccctcnnnnnnnnnnnnnnngtgtctaagatcacagttatccttcttgtgtaaaactgttacatcactatttgtagt 307  Q
    | || ||  | ||||||||| |||||||                ||||| |||| || ||| ||| |||||||||||||||||| | |||||||| |||     
T  10351304 gatggagttgcacccatttttatccctctttttgatt-------tgtctgagattactgttctccctcttgtgtaaaactgttatagcactatttttaga 10351212  T
Q  308 ggagctgataaaagttattttggtataggcatgcgaagcatgagcatcatatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatt 407  Q
    ||||||||||||||||      | ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10351211 ggagctgataaaagtt------gcataggcatgtgaagcatgatcatcatatcaccatcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatt 10351118  T
Q  408 tgtatgtgtttttgaactctaaaatgaggcaagcattgtatttcttatttctgcagggaaggaagaatttttcaacagggcttctagtctatag 501  Q
    ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||  |||| |  || ||||||||||||||||||||||||||    
T  10351117 tgtatgtgtttgtgaactctaaaatgagccaagcatcgtatttcttatttctgcatagaagcatcaaattttcaacagggcttctagtctatag 10351024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 10371168 - 10370961
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatctttct----ccacagggatgacttcttgtcccaaggatttaaattgaaactctaagg 104  Q
    ||||||||||||| || ||||| ||||||| ||||||||||| ||| |    ||||||||| ||||| ||||||| |||||||||||||| ||| |||||    
T  10371168 attcttttgtgatgtttttgaagttactttgatgagattcattttttttttcccacagggacgactttttgtcccgaggatttaaattgagactgtaagg 10371069  T
Q  105 gatgaaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattga 204  Q
    |||| ||||||| || ||  | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10371068 gatggaaggaagaacgtgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggtttgtaggaaaggttgaattga 10370969  T
Q  205 taatgttg 212  Q
    ||||||||    
T  10370968 taatgttg 10370961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 10347037 - 10346837
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatctttctccacagggatgacttcttgtcccaaggatttaaattgaaactctaagggatg 108  Q
    |||||||||| ||||||||||||||||| | |||||||  || |||  ||||||||||||||||||||||| |||||||||||||| | | |||||||||    
T  10347037 attcttttgtcatattgttgaacttactatgatgagatgaattttttcccacagggatgacttcttgtcccgaggatttaaattgagattgtaagggatg 10346938  T
Q  109 aaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattgataat 208  Q
      ||||||||||||  | |||||||||||||| || || || |||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||    
T  10346937 gtaggaaggacctgtgaagtgcagctgaaacatgaagcaccggttgtttcttgtgatggaattagtcaccttggtttgtggaaaaggttgaattgataat 10346838  T
Q  209 g 209  Q
    |    
T  10346837 g 10346837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 9318892 - 9318688
Alignment:
Q  13 ttttgtgatattgttgaacttacttttatgagattcatctttct-----ccacagggatgacttcttgtcccaaggatttaaattgaaactctaagggat 107  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| |     ||||||||| ||||||||||||| |||||||||||||| | | ||||||||    
T  9318892 ttttgtgatattgttgaacttgctttgatgagattcatttttttttcttccacagggacgacttcttgtcccgaggatttaaattgagattgtaagggat 9318793  T
Q  108 gaaaggaaggacctgctatgtgcagc---tgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattga 204  Q
    | |||||||||||||  |||||||||   ||||||||||| ||| ||||||||||||||||||||| ||  |||||||||||| ||||||| ||||||||    
T  9318792 ggaaggaaggacctgtgatgtgcagcagctgaaacaggatactcaagttgtttcttgtgatggaattagaaaccttggtttgtgggaaaggctgaattga 9318693  T
Q  205 taatg 209  Q
    |||||    
T  9318692 taatg 9318688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 68 - 501
Target Start/End: Complemental strand, 10340730 - 10340312
Alignment:
Q  68 acttcttgtcccaaggatttaaattgaaactctaagggatgaaaggaaggacctgctat----gtgcagctgaaacaggatgctccagttgtttcttgtg 163  Q
    |||| ||||||| |||||||||||||| ||| ||||||||| |||||||||||||  |     |||||||||||||||||||||||||||||||||| ||    
T  10340730 actttttgtcccgaggatttaaattgagactgtaagggatggaaggaaggacctgtgagtgaagtgcagctgaaacaggatgctccagttgtttcttatg 10340631  T
Q  164 atggaatgagtcaccttggtttgtaggaaaggttgaattgataatgttgtaggcgtaccca-ttttatccctcnnnnnnnnnnnnnnngtgtctaagat- 261  Q
    ||||||| |||||||| ||| ||| | ||||||||||||||||||| || ||  | ||||| |||||||||||                ||||| ||||     
T  10340630 atggaattagtcacctcggtatgtggtaaaggttgaattgataatgatggagttgcacccatttttatccctctttttgaat-------tgtctgagatc 10340538  T
Q  262 -cacagttatccttcttgtgtaaaactgttacatcactatttgtagtggagctgataaaagttattttggtataggcatgcgaagcatgagcatcatatc 360  Q
     |||| |||||| ||||||||| ||||| |  | |||| ||| |||| ||||||||||||| ||||||||  |||||||| |||| |||||||||||| |    
T  10340537 acacacttatccctcttgtgtagaactgatgtaccactgtttttagtagagctgataaaagctattttggcgtaggcatgtgaagtatgagcatcata-c 10340439  T
Q  361 accgtcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttttgaactctaaaatgaggcaagcattgtatttcttatttctg 460  Q
    ||| ||||| |||||||  ||||||||||||||||| ||||||||||      ||||| |||| | ||||||||||||||||       |||||||||||    
T  10340438 accatcaatttagatgtatatattgaaaatggtcga-ttaaaaaatt------tgtttgtgaattataaaatgaggcaagca-------tcttatttctg 10340353  T
Q  461 cagggaaggaagaatttttcaacagggcttctagtctatag 501  Q
    |||||||| | ||| |||| |||  ||||||||||||||||    
T  10340352 cagggaagcatgaaatttttaactcggcttctagtctatag 10340312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 304 - 493
Target Start/End: Complemental strand, 10346750 - 10346562
Alignment:
Q  304 tagtggagctgataaaagttattttggtataggcatgcgaagcatgagcatcatatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaaaa 403  Q
    ||||||| ||||| |||| |||||| |  |||||||| |||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||  ||    
T  10346750 tagtggaactgatcaaagctatttttgcttaggcatgtgaagcatgagcatcatatcaccatcaatttagatgtcaatatcgaaaatggtcgattt-gaa 10346652  T
Q  404 aatttgtatgtgtttttgaactctaaaatgaggcaagcattgtatttcttatttctgcagggaaggaagaatttttcaacagggcttcta 493  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||    ||||  | ||| ||||||||||||||||||    
T  10346651 aatttgtatgtgtttgtgaactctaaaatgaggcaagcatcttatttcttatttctattaggaaacatgaaattttcaacagggcttcta 10346562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 8574309 - 8574502
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattca----tctttctccacagggatgacttcttgtcccaaggatttaaattgaaactctaagg 104  Q
    |||||||||||||||||||||||||||||  ||||||||||    | ||| |||||||||||| |||||||||| || |||||||||||| | | |||||    
T  8574309 attcttttgtgatattgttgaacttacttcgatgagattcatttttttttttccacagggatggcttcttgtcctaaagatttaaattgagattgtaagg 8574408  T
Q  105 gatgaaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaatt 202  Q
    | | |    |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  8574409 ggtta----aaggacctgtgatgtgcagctgaaacaggatgctcaagttgtttcttgtgatggaattagtcaccttggtttgtggaaaaggttgaatt 8574502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 9285035 - 9285207
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatctttctccacagggatgacttcttgtcccaaggatttaaattgaaactctaagggatg 108  Q
    |||||||||| ||||||||||||||||||| ||||||| ||| |||   |||||||| ||||||||||||  |||||||||||||| | | |||||||||    
T  9285035 attcttttgtaatattgttgaacttactttgatgagatgcattttttctcacagggacgacttcttgtccggaggatttaaattgagattgtaagggatg 9285134  T
Q  109 aaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttg 181  Q
     |||||||||||||  |||||||||||||||| ||||||| ||| ||||||||||||||||| ||||| ||||    
T  9285135 gaaggaaggacctgtgatgtgcagctgaaacatgatgctcaagtagtttcttgtgatggaattagtcatcttg 9285207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 9326758 - 9326552
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattca-tctttct--ccacagggatgacttcttgtcccaaggatttaaattgaaactctaaggg 105  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||  ||||||||| ||||||||||||| ||||||||||||||   | ||||||    
T  9326758 attcttttgtgatattgttgaacttacttcgatgagattcagtttttctttccacagggacgacttcttgtcccgaggatttaaattgaggttgtaaggg 9326659  T
Q  106 atgaaaggaaggacctgctatgtgcagc---tgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaatt 202  Q
    ||  |||||||||||||  |||||||||   ||| ||||||| ||| ||||||||||||||||||||| ||||  ||||||||||  || |||||||||     
T  9326658 atagaaggaaggacctgtgatgtgcagcagctgatacaggatactcaagttgtttcttgtgatggaattagtctgcttggtttgtgcgataggttgaatg 9326559  T
Q  203 gataatg 209  Q
    |||||||    
T  9326558 gataatg 9326552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 389 - 501
Target Start/End: Complemental strand, 10370884 - 10370773
Alignment:
Q  389 atggtcgatttaaaaaatttgtatgtgtttttgaactctaaaatgaggcaagcattgtatttcttatttctgcagggaaggaagaatttttcaacagggc 488  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||||||    
T  10370884 atggtcgatttgaaaaatttgtatgtgtttgtgaactctaaaatgaggcaagcatt-tatttcttatttctgcagggaagcatgaaattttcaacagggc 10370786  T
Q  489 ttctagtctatag 501  Q
    ||||| |||||||    
T  10370785 ttctaatctatag 10370773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 9287924 - 9287732
Alignment:
Q  21 tattgttgaacttacttttatgagattcatctttct----ccacagggatgacttcttgtcccaaggatttaaattgaaactctaagggatgaaaggaag 116  Q
    |||||||||||| ||||| ||||||||||  ||| |    ||||| ||| ||||| ||||||| |||||||||||||| | | ||||||||| | |||||    
T  9287924 tattgttgaactaactttgatgagattcaatttttttttcccacaaggacgactttttgtcccgaggatttaaattgagattgtaagggatggatggaag 9287825  T
Q  117 gacctgctatgtgcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattgataatg 209  Q
     |||||  |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||  |||| ||||||| |||||||||||||    
T  9287824 tacctgtgatgtgcagctgaaacaggatgctcaagttgtttcttgtgatggagttagtcaccttgtcttgtgggaaaggctgaattgataatg 9287732  T

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Target: chr2; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 11425224 - 11425424
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatctttct-------ccacagggatgacttcttgtcccaaggatttaaattgaaactcta 101  Q
    ||||||||||||| |||||||||||||||  |||||||| || ||| |       ||||||||| ||||||||||||| |||||||||||||| | | ||    
T  11425224 attcttttgtgattttgttgaacttacttggatgagatttattttttttgtcttcccacagggacgacttcttgtcccgaggatttaaattgacattgta 11425323  T
Q  102 agggatgaaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaat 201  Q
    ||||||| ||||| |||||||  |||||||||||||||||||| ||| ||||||||||||||| ||||| | |||||||||||||  |||||| ||||||    
T  11425324 agggatggaaggatggacctgtgatgtgcagctgaaacaggatactcgagttgtttcttgtgaaggaattaatcaccttggtttg-gggaaagtttgaat 11425422  T
Q  202 tg 203  Q
    ||    
T  11425423 tg 11425424  T

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Target: chr2; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 9291299 - 9291102
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatctttct--ccacagggatgacttcttgtcccaaggatttaaattgaaactctaaggga 106  Q
    ||||||||| ||||||||||||||||     ||||||||| | ||| |  ||||||||| ||||||||||||| |||||||||||||| | | |||||||    
T  9291299 attcttttgcgatattgttgaacttag----atgagattcttttttttttccacagggaggacttcttgtcccgaggatttaaattgagattgtaaggga 9291204  T
Q  107 tgaaaggaaggacctgctatgtgcagctgaaacaggatgctc--cagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattga 204  Q
    || ||| |||| ||||  |||||||||||||||||||| |||   |||||||| |||||||||||| ||| |||||||||||| || |||||||||||||    
T  9291203 tggaagtaagggcctgtgatgtgcagctgaaacaggattctcaaaagttgtttgttgtgatggaattagttaccttggtttgtggggaaggttgaattga 9291104  T

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Target: chr2; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 9076500 - 9076700
Alignment:
Q  10 ttcttttgtgatattgttgaacttacttttatgagattcatcttt----ctccacagggatgacttcttgtcccaaggatttaaattgaaactctaaggg 105  Q
    ||||||||||||| | ||||||||||||  ||||||||||| |||     |||||||||||| |||||||||| ||||||||||||||| | | ||||||    
T  9076500 ttcttttgtgatacttttgaacttacttggatgagattcattttttttcttccacagggatggcttcttgtccaaaggatttaaattgagattgtaaggg 9076599  T
Q  106 atgaaaggaaggacctgctatgtg-cagctgaaaca-ggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattg 203  Q
    ||    |||||||||||  ||||| ||||||||| | |||||||  ||||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||    
T  9076600 at----ggaaggacctgtgatgtgtcagctgaaagatggatgctagagttgtttctt-tgatgtaattagtcaccttggtttgcaggaaaggttgaattg 9076694  T
Q  204 ataatg 209  Q
    ||||||    
T  9076695 ataatg 9076700  T

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Target: chr2; HSP #17
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 9272003 - 9271847
Alignment:
Q  56 tccacagggatgacttcttgtcccaaggatttaaattgaaactctaagggatgaaaggaaggacctgctatgtgcagctgaaacaggatgctcca---gt 152  Q
    |||||||||  ||||||||||||| |||||||||||||| | | ||||||||| || ||||||| ||  ||||||||||||||||||||  || |   ||    
T  9272003 tccacagggtcgacttcttgtcccgaggatttaaattgagattgtaagggatggaaagaaggacatgtgatgtgcagctgaaacaggataatcaagttgt 9271904  T
Q  153 tgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattgataatg 209  Q
    |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||    
T  9271903 tgtttcttgtaatggaattagtctccttggtttgtgggaaaggttgaattgataatg 9271847  T

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Target: chr2; HSP #18
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 9068948 - 9069096
Alignment:
Q  56 tccacagggatgacttcttgtcccaaggatttaaattgaaactctaagggatgaaaggaaggacctgctatgtgc-agctgaaacaggatgctccagttg 154  Q
    ||||||||||||  ||||||||| ||||||||||||||| | | |||||||||    ||||||||||  |||||| | |||||||| ||||||| |||||    
T  9068948 tccacagggatggtttcttgtccaaaggatttaaattgagattgtaagggatg----gaaggacctgtgatgtgccaactgaaacatgatgctcaagttg 9069043  T
Q  155 tttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattgataa 207  Q
     ||||||||||| ||| |||||||||||||||| |||||||||||||||||||    
T  9069044 cttcttgtgatgtaattagtcaccttggtttgtgggaaaggttgaattgataa 9069096  T

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Target: chr2; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 59 - 209
Target Start/End: Complemental strand, 9273344 - 9273194
Alignment:
Q  59 acagggatgacttcttgtcccaaggatttaaattgaaactctaagggatgaaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttc 158  Q
    ||||||| ||||||||||||| |||||||||||||| | | | ||||||| |||||||||||||  || |||||||  |||| ||||||| ||||| |||    
T  9273344 acagggacgacttcttgtcccgaggatttaaattgagattgtgagggatggaaggaaggacctgtgatatgcagctttaacacgatgctcaagttgcttc 9273245  T
Q  159 ttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattgataatg 209  Q
    |||| ||||||| |||| ||||||||||   ||||||||||||||||||||    
T  9273244 ttgttatggaattagtctccttggtttgcgagaaaggttgaattgataatg 9273194  T

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Target: chr2; HSP #20
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 354 - 443
Target Start/End: Complemental strand, 9300899 - 9300814
Alignment:
Q  354 tcatatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttttgaactctaaaatgaggcaagcat 443  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||    
T  9300899 tcatatcacagtcaatttagatgtcaatattgaaaatggtcgatttaaaaaatt----tgtgtttgtgaactctaaaatgaggcaagcat 9300814  T

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Target: chr2; HSP #21
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 59 - 209
Target Start/End: Complemental strand, 9315359 - 9315210
Alignment:
Q  59 acagggatgacttcttgtcccaaggatttaaattgaaactctaagggatgaaaggaaggacctgctatgtg---cagctgaaacaggatgctccagttgt 155  Q
    ||||||| ||||||||||||| |||||||||||||| | | |||||||||    || |||||||  |||||   ||||||||||| ||||||| | ||||    
T  9315359 acagggacgacttcttgtcccgaggatttaaattgagattgtaagggatg----gagggacctgtgatgtgtagcagctgaaacatgatgctcaacttgt 9315264  T
Q  156 ttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattgataatg 209  Q
    ||||||||||||||| ||||  |||||||||| |||| ||||||||||||||||    
T  9315263 ttcttgtgatggaattagtctgcttggtttgtgggaatggttgaattgataatg 9315210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 9062039 - 9062182
Alignment:
Q  20 atattgttgaacttacttttatgagattcatctttctcc--acagggatgacttcttgtcccaaggatttaaattgaaactctaag----ggatgaaagg 113  Q
    ||||||||||||||||||| ||||||||||| ||| | |  ||||||| ||||||||||||| |||||||||| ||||| | ||||    ||||| ||||    
T  9062039 atattgttgaacttactttgatgagattcattttttttctcacagggacgacttcttgtcccgaggatttaaactgaaattgtaagggatggatggaagg 9062138  T
Q  114 aaggacctgctatgtgcagctgaaacaggatgctccagttgttt 157  Q
    ||||||||   |||||||||||||||| ||||||| ||||||||    
T  9062139 aaggacctatgatgtgcagctgaaacaagatgctcaagttgttt 9062182  T

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Target: chr2; HSP #23
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 332 - 443
Target Start/End: Complemental strand, 9287597 - 9287490
Alignment:
Q  332 ataggcatgcgaagcatgagcatcatatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttttgaactctaaaa 431  Q
    |||| |||| |||| ||||||||||||||||  ||||| |||||||||| |||||||||||| ||||||||| |||    ||||||| |||||||||||     
T  9287597 atagacatgtgaagtatgagcatcatatcacaatcaatttagatgtcaaaattgaaaatggttgatttaaaatatt----tgtgtttgtgaactctaaag 9287502  T
Q  432 tgaggcaagcat 443  Q
    ||||||||||||    
T  9287501 tgaggcaagcat 9287490  T

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Target: chr2; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 324 - 409
Target Start/End: Complemental strand, 9271741 - 9271656
Alignment:
Q  324 attttggtataggcatgcgaagcatgagcatcatatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttg 409  Q
    ||||||| || |||||| ||||||||| | |||| ||||  ||||| ||||||||||||||||||||||||||||||||| |||||    
T  9271741 attttggcatcggcatgtgaagcatgaacttcatgtcacaatcaatttagatgtcaatattgaaaatggtcgatttaaaagatttg 9271656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 10370939 - 10370887
Alignment:
Q  251 gtgtctaagatcacagttatccttcttgtgtaaaactgttacatcactatttg 303  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  10370939 gtgtctaagatcacagttatcccttttgtgtaaaactgttacatcactatttg 10370887  T

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Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 499 - 552
Target Start/End: Original strand, 25515743 - 25515796
Alignment:
Q  499 tagtttttgagcaatgaaaaaactggaaaattgatgtttctgtttctgcctatg 552  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  25515743 tagtttttgagcgatgaagaaactggaaaactgatgtttctgtttctgcctatg 25515796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 9363820 - 9363617
Alignment:
Q  10 ttcttttgtgatattgttgaacttacttttatgagattca-----tctttctccacagggatgacttcttgtcccaaggatttaaattgaaactctaagg 104  Q
    ||||||| || ||||||||| ||||||| |||||| ||||     | ||| | ||||||||||||||||||||||||||||||||||||  | | |||||    
T  9363820 ttcttttatgttattgttgagcttacttctatgagtttcacgtgtttttttttcacagggatgacttcttgtcccaaggatttaaattgtcattgtaagg 9363721  T
Q  105 ga-tgaaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttct-tgtgatggaatgagtcaccttggtttgtaggaaaggttgaatt 202  Q
    || ||| | |||| ||| |  ||||| ||||||| | |||| ||| ||||||||||  | || ||||||||||||||||||| |  ||||  ||||||||    
T  9363720 gagtgata-gaagaaccagggatgtgtagctgaagccggatactcaagttgtttctaagcgacggaatgagtcaccttggttagcgggaagagttgaatt 9363622  T
Q  203 gataa 207  Q
    |||||    
T  9363621 gataa 9363617  T

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Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 7116884 - 7117003
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatctt---------tctccacagggatgacttcttgtcccaaggatttaaattgaaactc 99  Q
    |||||||||||| ||||||||||||||||  ||||||||||| ||         | || ||||||| |||||||||||| ||||||||||||||| | |     
T  7116884 attcttttgtgacattgttgaacttacttcgatgagattcattttattcatttttttctacagggaggacttcttgtccaaaggatttaaattgagattg 7116983  T
Q  100 taagggatgaaaggaaggac 119  Q
    ||||||||| ||||||||||    
T  7116984 taagggatggaaggaaggac 7117003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 12019735 - 12019824
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatct----ttctccacagggatgacttcttgtcccaaggatttaaattga 94  Q
    |||| |||||||||||||||| ||||||| |||||||| ||| |    || |  |||||||||||||||||||| |||||||||||||||    
T  12019735 attcatttgtgatattgttgagcttacttctatgagatgcatgtacttttttttacagggatgacttcttgtccaaaggatttaaattga 12019824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 7117004 - 7117057
Alignment:
Q  156 ttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattgataatg 209  Q
    ||||||||||||||| ||||| |||||||||| |||| ||||||||| ||||||    
T  7117004 ttcttgtgatggaattagtcatcttggtttgttggaatggttgaattaataatg 7117057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 9295528 - 9295582
Alignment:
Q  40 atgagattcatctttctccacagggatgacttcttgtcccaaggatttaaattga 94  Q
    ||||||||||| ||| || ||||||||||| ||||||||  ||||||||||||||    
T  9295528 atgagattcatttttttctacagggatgacatcttgtccggaggatttaaattga 9295582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 9068886 - 9068927
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcat 50  Q
    |||||||||||| ||||||||||||||||  |||||||||||    
T  9068886 attcttttgtgaaattgttgaacttacttcgatgagattcat 9068927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 8580696 - 8580728
Alignment:
Q  62 gggatgacttcttgtcccaaggatttaaattga 94  Q
    ||||||| |||||||||||||||||||||||||    
T  8580696 gggatgatttcttgtcccaaggatttaaattga 8580728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 9 - 501
Target Start/End: Complemental strand, 26574297 - 26573815
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatctttctccacagggatgacttcttgtcccaaggatttaaattgaaactctaagggatg 108  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||  ||||||||| ||||| ||||||  || ||||||||||| ||| |||| ||||    
T  26574297 attcttttgtgatatttttgaacttactttgatgagattcattttttcccacagggacgactttttgtccagagaatttaaattgagactgtaagcgatg 26574198  T
Q  109 aaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattgataat 208  Q
     | |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||||| ||||    
T  26574197 gacggaaggacctgtgaagtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggtt--------aggttgaattggtaat 26574106  T
Q  209 gttgtaggcgtacccatttt-atccctcnnnnnnnnnnnnnnngtgtctaagatcacagttatccttctt------gtgtaaaactgttacatcactatt 301  Q
    | || ||| | ||||||||| |||||||                | ||| ||||||||||||||| ||||      ||||||||||| || || ||||||    
T  26574105 gatggaggtgcacccatttttatccctctttttgaat-------tttctgagatcacagttatccctcttatgtgtgtgtaaaactgatatattactatt 26574013  T
Q  302 tgtagtggagctgataaaagttattttggtataggcatgcgaagcatgagcatcatatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaa 401  Q
    | || ||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| ||| | ||||||    
T  26574012 tttaatggagctgataaaagctattttggcataggcatgtgaagcttgagcatcatatcaccatcaatgtagatgtcaatattgaaattgggcaatttaa 26573913  T
Q  402 aaaatttgtatgtgtttttgaactctaaaatgaggcaagcattgtatttcttatttctgcagggaaggaagaatttttcaacagggcttctagtctatag 501  Q
    ||||||||||  ||||| ||||||||||||||||||||||||  |||||||||| ||| |||||||| |  ||  |||||||||||||||||||||||||    
T  26573912 aaaatttgta--tgtttgtgaactctaaaatgaggcaagcatcttatttcttatatcttcagggaagcatcaaaatttcaacagggcttctagtctatag 26573815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 502 - 552
Target Start/End: Original strand, 41933560 - 41933610
Alignment:
Q  502 tttttgagcaatgaaaaaactggaaaattgatgtttctgtttctgcctatg 552  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41933560 tttttgagcaatgaagaaactggaaaattgatgtttctgtttctgcctatg 41933610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 381
Target Start/End: Complemental strand, 560591 - 560526
Alignment:
Q  313 tgataaaagttattttggtataggcatgcgaagcatgagcatcatatcaccgtcaatgtagatgtcaat 381  Q
    ||||||||| |||||||| ||||||||| |   |||||||||||||||||| ||||| |||||||||||    
T  560591 tgataaaagctattttggcataggcatgtg---catgagcatcatatcaccatcaatttagatgtcaat 560526  T

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Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 41968246 - 41968408
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatctttctccacagggatgacttcttgtcccaaggatttaaattgaaactctaagggatg 108  Q
    |||||||||||||||||||||||||||||  ||||||||||| ||| || |||||||||||||||||||||||||||||||||||| | | |||||||||    
T  41968246 attcttttgtgatattgttgaacttacttcaatgagattcatttttttcgacagggatgacttcttgtcccaaggatttaaattgagattgtaagggatg 41968345  T
Q  109 aaaggaaggacctgctatgtgcagctgaaa-caggatgctccagttgtttcttgtgatggaat 170  Q
     |||||||||||||  |||||||||||||| |||||||||| ||||||||||| |||||||||    
T  41968346 gaaggaaggacctgtgatgtgcagctgaaaccaggatgctcaagttgtttcttctgatggaat 41968408  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 499 - 552
Target Start/End: Complemental strand, 35551804 - 35551751
Alignment:
Q  499 tagtttttgagcaatgaaaaaactggaaaattgatgtttctgtttctgcctatg 552  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  35551804 tagtttttgagcaatgaagaaactgaaaaattgatgtttatgtttctgcctatg 35551751  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 499 - 552
Target Start/End: Complemental strand, 39491245 - 39491192
Alignment:
Q  499 tagtttttgagcaatgaaaaaactggaaaattgatgtttctgtttctgcctatg 552  Q
    |||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  39491245 tagtttttgagcaatgaagaaaccgtaaaattgatgtttctgtttctgcctatg 39491192  T

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Target: chr3 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 37461742 - 37461536
Alignment:
Q  8 cattcttttgtgatattgttgaacttacttttatgagattcatcttt-----ctccacagggatgacttcttgtcccaaggatttaaattgaaactctaa 102  Q
    ||||||||| ||||||||||||||||||||  ||||||||||| | |     || ||||||||  |||||||||||  |||||||||||||| | | |||    
T  37461742 cattcttttttgatattgttgaacttacttaaatgagattcatttgtttttcctacacagggaccacttcttgtccggaggatttaaattgagattgtaa 37461643  T
Q  103 gggatgaaaggaaggacctgctatgtgcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaatt 202  Q
    ||| || ||||||| |||||  |||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||| || |||||||||||    
T  37461642 ggggtggaaggaagaacctgtaatgtgcagctgaaacagggtgctcaagttgtttcttgtgatggaattagtctccttggtttgtgggtaaggttgaatt 37461543  T
Q  203 gataatg 209  Q
    |||||||    
T  37461542 gataatg 37461536  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 439
Target Start/End: Complemental strand, 39426906 - 39426803
Alignment:
Q  332 ataggcatgcgaagcatgagcatcatatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttttgaactctaaaa 431  Q
    ||||||||| ||||| |||||||||||||||| ||||| || |||||||||||||||||||||||| || ||||    | ||||||| ||||||||||||    
T  39426906 ataggcatgtgaagcttgagcatcatatcaccatcaatttaaatgtcaatattgaaaatggtcgatctagaaaa----tctgtgtttgtgaactctaaaa 39426811  T
Q  432 tgaggcaa 439  Q
    ||||||||    
T  39426810 tgaggcaa 39426803  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 391
Target Start/End: Complemental strand, 39426215 - 39426149
Alignment:
Q  325 ttttggtataggcatgcgaagcatgagcatcatatcaccgtcaatgtagatgtcaatattgaaaatg 391  Q
    |||||| ||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  39426215 ttttggcataggcatgtgaagcatgagcatcatatcacagtcaatttagatgtccatattgaaaatg 39426149  T

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Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 324 - 501
Target Start/End: Original strand, 10857004 - 10857170
Alignment:
Q  324 attttggtataggcatgcgaagcatgagcatcatatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttttgaa 423  Q
    ||||||| |||||||||  ||||||||||||||||||||| ||||| ||||||| |||||| || |||||||||||||||||||    ||||||| ||||    
T  10857004 attttggcataggcatgtaaagcatgagcatcatatcaccttcaatttagatgtaaatattcaatatggtcgatttaaaaaatt----tgtgtttgtgaa 10857099  T
Q  424 ctctaaaatgaggcaagcattgtatttcttatttctgcagggaaggaagaatttttcaacagggcttctagtctatag 501  Q
    ||||||||||||||||||        || |||||||||||||||  ||||| |||||||||| |||||||||||||||    
T  10857100 ctctaaaatgaggcaagc-------gtcgtatttctgcagggaaacaagaaattttcaacagagcttctagtctatag 10857170  T

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Target: scaffold0667 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 1891 - 1713
Alignment:
Q  13 ttttgtgatattgttgaacttacttttatgagattcatctttctccacagggatgacttcttgtcccaaggatttaaattgaaactctaagggatgaaag 112  Q
    |||||||||||  ||||||||||||  ||||||||||| ||| || ||||||| ||||||||||||  |||||||||||||| | | |||||| || ||     
T  1891 ttttgtgatatcattgaacttacttcgatgagattcatttttttctacagggacgacttcttgtccggaggatttaaattgagattgtaagggttggaat 1792  T
Q  113 gaaggacctgctatgt---gcagctgaaacaggatgctccagttgtttcttgtgatggaatgagtcaccttggtttgta 188  Q
    |||||| |||  ||||   ||||||||||||| || ||| ||||||||||||| ||||||| ||||  |||||||||||    
T  1791 gaaggatctgtgatgtgcagcagctgaaacagaattctcaagttgtttcttgtaatggaattagtctgcttggtttgta 1713  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 499 - 552
Target Start/End: Original strand, 556580 - 556633
Alignment:
Q  499 tagtttttgagcaatgaaaaaactggaaaattgatgtttctgtttctgcctatg 552  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  556580 tagtttttgagcaatgaagaaattggaaagttgatgtttctgtttctgcctatg 556633  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 443
Target Start/End: Complemental strand, 45241776 - 45241679
Alignment:
Q  342 gaagcatgagcatcatatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttttgaactctaaaatgaggcaagc 441  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||| ||| | |||||| ||  ||    ||||||| |||||| |||||||||||||||    
T  45241776 gaagcttgagcatcatatcaccatcaatttagatgtcaatattgaagatgattgatttataacctt----tgtgtttgtgaactataaaatgaggcaagc 45241681  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 501
Target Start/End: Complemental strand, 45241368 - 45241315
Alignment:
Q  448 tttcttatttctgcagggaaggaagaatttttcaacagggcttctagtctatag 501  Q
    ||||||||||||||| ||||| |||||   | ||||||||||||||||||||||    
T  45241368 tttcttatttctgcatggaagcaagaaagatccaacagggcttctagtctatag 45241315  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 36223728 - 36223632
Alignment:
Q  333 taggcatgcgaagcatgagcatc-atatcaccgtcaatgtagatgtcaatattgaaaatggtcgatttaaaaaatttgtatgtgtttttgaactctaaaa 431  Q
    ||||||||  ||||||||||||  |||||||| ||||| |||||||||||||||||||| ||||||||| ||||    | ||||||| ||||||||||||    
T  36223728 taggcatgttaagcatgagcatatatatcaccatcaatttagatgtcaatattgaaaattgtcgatttagaaaa----tctgtgtttgtgaactctaaaa 36223633  T

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Target: scaffold0238 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 499 - 552
Target Start/End: Original strand, 18847 - 18900
Alignment:
Q  499 tagtttttgagcaatgaaaaaactggaaaattgatgtttctgtttctgcctatg 552  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||| ||||||    
T  18847 tagtttttgagcaatgaagaaactggaaaattgatgtttaggtttcttcctatg 18900  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 29444190 - 29444290
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattca--tctttctc-cacagggatgacttcttgtcccaaggatttaaattgaaactctaaggg 105  Q
    ||||||||||||||||||||| ||||||| |||||||| ||  | ||| ||  | |||||| ||||||||||||||||||||||| ||||| | ||||||    
T  29444190 attcttttgtgatattgttgagcttacttctatgagatgcatgtatttttcttatagggataacttcttgtcccaaggatttaaactgaaattgtaaggg 29444289  T
Q  106 a 106  Q
    |    
T  29444290 a 29444290  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 29454197 - 29454287
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcatct--ttctcc-acagggatgacttcttgtcccaaggatttaaattgaaa 96  Q
    ||||||||||||| ||| ||| ||||||| |||||||| ||| |  || ||  ||||||||||||||||||||| ||||||||||||||||    
T  29454197 attcttttgtgatgttgctgagcttacttctatgagatgcatgtatttttcttacagggatgacttcttgtcccgaggatttaaattgaaa 29454287  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 29422532 - 29422442
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattc----atctttctccacagggatgacttcttgtcccaaggatttaaattgaaa 96  Q
    ||||||||||||| ||| ||| ||||||| |||||||| |    || |||||  ||||||||||||||||||||| ||||||||||||||||    
T  29422532 attcttttgtgatgttgctgagcttacttctatgagatgcgtgtatttttctt-acagggatgacttcttgtcccgaggatttaaattgaaa 29422442  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 29462264 - 29462328
Alignment:
Q  143 atgctccagttgtttcttgtgatggaatgagtcaccttggtttgtaggaaaggttgaattgataa 207  Q
    |||||| |||||||||| || ||||||| |||||||||| ||||| |||| | ||||||||||||    
T  29462264 atgctcaagttgtttctagtaatggaattagtcaccttgttttgtgggaaggattgaattgataa 29462328  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 29462160 - 29462201
Alignment:
Q  9 attcttttgtgatattgttgaacttacttttatgagattcat 50  Q
    |||||||| ||||||||||||||||||||  |||||||||||    
T  29462160 attcttttatgatattgttgaacttacttacatgagattcat 29462201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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