View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13366_low_11 (Length: 555)
Name: NF13366_low_11
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 35 - 516
Target Start/End: Original strand, 330047 - 330526
Alignment:
| Q |
35 |
accaatagattgcaagtctctgtattttgctattttacataaaatattaagaattaccaacaatggaatgtgcaaaatttcaatttgataggagaaattg |
134 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
330047 |
accaatagattgcaagtctctgtattttactattttacataaaatattaagaattaccagtaatggaatgtgcaaaatttcaatttgatgggagaaattg |
330146 |
T |
|
| Q |
135 |
ttctatttgtaactgtatgcatctataaacacatttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330147 |
ttctatttgtaactgtatgcatctataaacacatttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaa |
330246 |
T |
|
| Q |
235 |
gtatttaaaacacatgaagttagtgtgaccttgattgcaacctaagagcacttaagccacgaggctctcctacctaatgaactagtttttggtttgggct |
334 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
330247 |
gtatttaaaacacatgaagttagtgtggccttgattgcaacctaagagcacttaagccacgaggctctcctacctaatgagctagtttttgatttgggct |
330346 |
T |
|
| Q |
335 |
cacgggcttaactcttaacaaattactgacaccatatgcgacgacgccaaatatatttgtttctatcttacttcacccggtctcatctcatatataagnn |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
330347 |
cacgggcttaactcttaacaaattactgacatcatatgcgacgacgcctaatatatttgtttctatcttacttcatccggtctcatctcatatatatg-- |
330444 |
T |
|
| Q |
435 |
nnnnnnnntcatattttaaattcattgaataataaataaatgtatttgatatatagaccatatacatgagatgagagataat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
330445 |
aaaaaaaatcatattttaaattcattgaataataaataaatgtatttgatatatagaccatatacatgagatgagagataat |
330526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 37223591 - 37223635
Alignment:
| Q |
284 |
acttaagccacgaggctctcctacctaatgaactagtttttggtt |
328 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
37223591 |
acttaagccattaggctctcccacctaatggactagtttttggtt |
37223635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University