View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_12 (Length: 552)
Name: NF13366_low_12
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 19 - 537
Target Start/End: Original strand, 40472455 - 40472974
Alignment:
| Q |
19 |
cagagagacggttgtttgtgacacaaattttgccattggtttgtaaatgagagattgattggtatcaggtttgggatccatgtcagaagaactgctaagt |
118 |
Q |
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| T |
40472455 |
cagagagacggttgtttgtgacacaaattttgccattggtttgtaaatgagagattgattggtatcaggtttgggatccatgtcagaagaactgctaagt |
40472554 |
T |
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| Q |
119 |
gcacctccagaaatattagcctgtaattgataaaaacacaacatacattagaaaccaagaagcatttcaaaacagtatggcaatgttttaaaaaccaaaa |
218 |
Q |
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| T |
40472555 |
gcacctccagaaatattaacctgtaattggtaaaaacacaacatacattagaaaccaagaagcatttcaaaacagtatggcaatgttttaaaaaccaaaa |
40472654 |
T |
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| Q |
219 |
cggacatcaatccggcatgacctctaggtcatgattcaaccgtcttaaaccactcgaatcgagacgaaaccaaaatcgaaccgccaaaataaccacacca |
318 |
Q |
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| T |
40472655 |
cggacatcaatccggcatgacctctaggtcatgattcaaccgtcttaaaccgctcgaatcgagacgaaaccaaaatcgaactgccaaaataaccacacca |
40472754 |
T |
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| Q |
319 |
tagtagtggtccgttcaaggttcactcggttggaacttccag-tcggtttttaaaacactgcattatggtatgttgcactgaatgttcacctgagaaggg |
417 |
Q |
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| T |
40472755 |
tagtagtggtccgttcaaggttcactcggttggaacttccagttcagtttttaaaacactgcattatggtatgttgcactgaatgttcacctgagaaggg |
40472854 |
T |
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| Q |
418 |
gggatattcattgctggcttgaacctcactgtctttggcctaatggcggatattgtagtttgagaagatgcaattggaggagtggaatcgattgcacctg |
517 |
Q |
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| T |
40472855 |
gggatattcattgctggcttgaacctcactgtctttggcctaatggcggatattgtagtttgagaagatgcaattggaggagtggaatcgattgcacctg |
40472954 |
T |
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| Q |
518 |
ctagaagttctgagaaagat |
537 |
Q |
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| T |
40472955 |
ctagaagttctgagaaagat |
40472974 |
T |
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Back To:
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 15190591 - 15190546
Alignment:
| Q |
198 |
gcaatgttttaaaaaccaaaacggacatcaatccggcatgacctct |
243 |
Q |
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| T |
15190591 |
gcaatgttttaaaaaccaaagcagacatcaaaccggcaagacctct |
15190546 |
T |
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