View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_15 (Length: 509)
Name: NF13366_low_15
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 72 - 359
Target Start/End: Original strand, 40125928 - 40126226
Alignment:
| Q |
72 |
gtaaactttcaagttggatcttgtaaagtgagtaacattaatagttgttgtaacaaactaacggttttttataatatatatacttataatatctacatga |
171 |
Q |
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| T |
40125928 |
gtaaactttcaagttggatcttgtaaagtgagtaacataaatagttgttgtaacaaactaacggttttttataatatatatacttataatatctacatga |
40126027 |
T |
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| Q |
172 |
tattattcactttataaagtgagttcctcattttaaagtaatcgtaaactttaaaaa-----------ggattatatagaaatcggtgggagtttacgtt |
260 |
Q |
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| T |
40126028 |
tattattcactttataaagtgagttcctcattttaaagtaatcgtaaactttaaaaatcctagatattggattatatagaagtcggtgagagtttacgtt |
40126127 |
T |
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| Q |
261 |
caagacaa-agttattatcattcctaaaaaatgacaagagttattattttgattaggttcaacaaaacttctctctatttctctccaccattttacttac |
359 |
Q |
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| T |
40126128 |
caagacaagagttattatcattcctcaaaaatgacaagagttatta-tctgattaggttcaacaaaacttctctctatttctctccaccattttacttac |
40126226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 40126312 - 40126357
Alignment:
| Q |
446 |
cttgttggagaggaatgcgtgttagagagaattatatctatctttt |
491 |
Q |
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| T |
40126312 |
cttgttggagaggaatgcgtgttagagagaattatatctatctttt |
40126357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 40125897 - 40125940
Alignment:
| Q |
7 |
tcgaagaatatgtcaatatgttattttatttgtaaactttcaag |
50 |
Q |
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| T |
40125897 |
tcgaacaatatgtcaatatgttattttatttgtaaactttcaag |
40125940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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