View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_16 (Length: 498)
Name: NF13366_low_16
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_16 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (5 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 15 - 498
Target Start/End: Complemental strand, 33153705 - 33153222
Alignment:
| Q |
15 |
agatgaattgataaacatacatgttaacatgatgatacatttgataaacattttcttaaccagcccaaaaccaaaaaatactatcaaattacctacatcc |
114 |
Q |
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| T |
33153705 |
agatgaattgataaacatacatgttaacatgatgatacatttgataaacattttcttaaccagcccaaaaacaaaaaatactatcaaattacctacatcc |
33153606 |
T |
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| Q |
115 |
aagaactgaaacccaaagtgccaccaaaacttatgcagaatcctgttaattcatttgcgaaattccaatacaagaagctacttgcctttctctcttcagc |
214 |
Q |
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| T |
33153605 |
aagaactgaaacccaaagtgccaccaaaacttatgcagaatcctgttaattcatttgcgaaattccaatacaagaagctacttgcctttttctcttcaga |
33153506 |
T |
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| Q |
215 |
tcaagaattctaccttggatctcgttaagtaaatccgcacattcaatattgtaatctgaaatgcaccgtagaacagttcccaaactagctatttcttccc |
314 |
Q |
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| T |
33153505 |
tcaataattctaccttggatctcgttaagtaaatccgcacgttcaatattgtaatctgaaatgcaccgtagaacagttcccaaactagctatttcttctc |
33153406 |
T |
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| Q |
315 |
ttgtgttaccctggttccaaattcaacttgtttataactaacacgatggtgcatgaagatagattgtttcataaaacatatatgaataagaaaagagaac |
414 |
Q |
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| T |
33153405 |
ttgtgttaccctggttccaaattcaacttgtttataactaacatgatggtgcatgaagatagattgtttcataaaacatatatgaataagaaaagagaac |
33153306 |
T |
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| Q |
415 |
ctttatttcaatggagttggttgtcttgcacttgctctcataagtcacttttgcactctgcacatgttcctgcaagagatcaac |
498 |
Q |
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| T |
33153305 |
ctttatttcaatggagttggttgtcttgcacttgctctcataagtcacttttgcactctgcacatgttcctgcaagagatcaac |
33153222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 25081213 - 25081080
Alignment:
| Q |
31 |
atacatgttaacatgatgatacat-ttgataaacattttcttaaccagcccaaaaccaaaaaatactatcaaattacctacatccaagaactgaaaccca |
129 |
Q |
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| T |
25081213 |
atacatgttaacatgataatacatagatataaacaatttcttaaccagcccaaaacc-aaaaatactatcaaattaccaacatcctagaactgaaacccg |
25081115 |
T |
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| Q |
130 |
aagtgccaccaaaacttatgcagaatcctgttaat |
164 |
Q |
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| T |
25081114 |
aagtgccaccaaaacttatgcagaatcctgttaat |
25081080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 177 - 498
Target Start/End: Complemental strand, 2363978 - 2363652
Alignment:
| Q |
177 |
ttccaatacaagaagctacttgcctttctctct--tcagctcaagaattctaccttggatctcgttaagtaaatccgcacattcaatattgtaatctgaa |
274 |
Q |
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||||||||||| |||||||| ||||||||||| | |||||| |||||||||| || |||||||| ||||||||| | |||| ||||||| ||||||| |
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| T |
2363978 |
ttccaatacaa-aagctactcacctttctctctatttagctcatgaattctaccgtgaatctcgttcagtaaatccacggattccatattgttatctgaa |
2363880 |
T |
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| Q |
275 |
atgcaccgtagaacagttcccaaactagctatttct---tcccttgtgttaccctggttccaaattcaacttgtttataactaacacgatggtgcatgaa |
371 |
Q |
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| T |
2363879 |
aggcactgtagaacagttcccagactagcaatttcttggtcttttgccttatcctgatttcaaattgaaaatatttataaattacatccaggtgcatgaa |
2363780 |
T |
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| Q |
372 |
gatagattgtttcataaaacat-atatgaataagaaaagagaacctttatttcaatggagttggttgtcttgcacttgctctcataagtcacttttgcac |
470 |
Q |
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||| || |||||||||||| || || |||||||| ||| |||||||| ||||| ||||||||||||| |||||| ||||||||| | || | ||||| |
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| T |
2363779 |
gatggaatgtttcataaaatataatttgaataagtaaaaagaaccttgatttctatggagttggttgccttgcaactgctctcattaatcgatcttgcat |
2363680 |
T |
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| Q |
471 |
tctgcacatgttcctgcaagagatcaac |
498 |
Q |
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| T |
2363679 |
tctgcacatgttcccgcaatagaccaac |
2363652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 498
Target Start/End: Original strand, 39425098 - 39425228
Alignment:
| Q |
368 |
tgaagatagattgtttcataaaacatatatgaataagaaaaga-gaacctttatttcaatggagttggttgtcttgcacttgctctcataagtcactttt |
466 |
Q |
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||||||| || |||||||||||| | || |||||||||||| | ||||||| ||||| |||||||||||| || |||| | |||||| || ||| |||| |
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| T |
39425098 |
tgaagatggaatgtttcataaaataaat-tgaataagaaaaaaagaaccttaatttcgatggagttggttttcatgcaagtactctcagaaatcagtttt |
39425196 |
T |
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| Q |
467 |
gcactctgcacatgttcctgcaagagatcaac |
498 |
Q |
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| T |
39425197 |
gcattctgcacatgttctcgcaagagatcaac |
39425228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 498
Target Start/End: Complemental strand, 39372396 - 39372311
Alignment:
| Q |
413 |
acctttatttcaatggagttggttgtcttgcacttgctctcataagtcacttttgcactctgcacatgttcctgcaagagatcaac |
498 |
Q |
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| T |
39372396 |
accttgatttcaatggagttggttttcttgcaactgccctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaac |
39372311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 39224914 - 39224826
Alignment:
| Q |
410 |
agaacctttatttcaatggagttggttgtcttgcacttgctctcataagtcacttttgcactctgcacatgttcctgcaagagatcaac |
498 |
Q |
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|||||||| |||||||||||||||||| ||||||| |||||||| || | | ||| ||| |||| |||||||| ||||| | |||||| |
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| T |
39224914 |
agaaccttgatttcaatggagttggttttcttgcaactgctctcacaaataagtttggcattctggacatgttcttgcaacatatcaac |
39224826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 498
Target Start/End: Original strand, 39492916 - 39493015
Alignment:
| Q |
398 |
gaataagaaaagagaacctttatttcaatggagttggttgtcttgcacttgctctcataagtcacttttgcactctgcacatgttcctgcaagagatcaa |
497 |
Q |
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||||||||||| | |||||| |||||||||||||||||| |||||| |||||||| || | | |||| | ||||||||||||| | |||||||||| |
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| T |
39492916 |
gaataagaaaaaa-aaccttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacatgttcttcaaagagatcaa |
39493014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 498
Target Start/End: Complemental strand, 51577103 - 51577002
Alignment:
| Q |
397 |
tgaataagaaaagagaacctttatttcaatggagttggttgtcttgcacttgctctcataagtcacttttgcactctgcacatgttcctgcaagagatca |
496 |
Q |
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||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| || |||||||||| | ||||||| ||||| |||||||||| |
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| T |
51577103 |
tgaataagaaatacgaaccttgatttcaatggagttggttttcttgcagttgctctcagaaatcacttttgcccactgcacaagttcccacaagagatca |
51577004 |
T |
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| Q |
497 |
ac |
498 |
Q |
| |
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|| |
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| T |
51577003 |
ac |
51577002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 51577283 - 51577214
Alignment:
| Q |
212 |
agctcaagaattctaccttggatctcgttaagtaaatccgcacattcaatattgtaatctgaaatgcacc |
281 |
Q |
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|||||||||||||||||||| |||| || |||||||||| || |||| ||||||| ||| |||| ||||| |
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| T |
51577283 |
agctcaagaattctaccttgaatctggtcaagtaaatccacatattctatattgttatccgaaacgcacc |
51577214 |
T |
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