View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13366_low_17 (Length: 498)
Name: NF13366_low_17
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 32162853 - 32163334
Alignment:
| Q |
1 |
taaaacagagtagcaattacgtgatattgttcttactacaaagcttcattgtaacattctcaaagcaaatgctgctgatagttttgttttgactagttta |
100 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32162853 |
taaaacagcgtctcaattacgtgatattgttcttactacaaagcttcactgtaacattctcaaatcaaatgctgctgatagttttgttttgactagttta |
32162952 |
T |
|
| Q |
101 |
gttgatgcttattcgaaatgtgggaaactaagggatgcacgaaaggtgtttgatgaaatacctgatagaagtgtggtgtcatggacttcgatgattgttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32162953 |
gttgatgcttattcgaaatgtgggaaactaagggatgcacgaaaggtgtttgatgaaatacctgatagaagtgtggtgtcgtggacttcgatgattgttg |
32163052 |
T |
|
| Q |
201 |
cttatgttcaaaatgaatgtgctgaggaagggttgatgttgtttaatagaatgagggaagggtttgttgatgggaatgtgtttactgttgggagtttggt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32163053 |
cttatgttcaaaatgaatgtgctgaggaagggttgatgttgtttaatagaatgagggaagggtttcttgatgggaatgtgtttactgttgggagtttggt |
32163152 |
T |
|
| Q |
301 |
tacggcgtgtactaaattagggtgtttgcatcaagggaaatgggttcatgggtatgttattaagaatgggattgagattaattcttatttggctacttct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32163153 |
tacggcgtgtactaaattagggtgtttgcatcaagggaaatgggttcatgggtatgttattaagaatgggattgagattaattcttatttggctacttct |
32163252 |
T |
|
| Q |
401 |
cttttgaatatgtatgttaaatgtggtgatattggtgatgctcgttccgtgtttgatgaattttcagtttcgacttgtggtg |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32163253 |
cttttgaatatgtatgttaaatgtggtgatattggtgatgctcgttccgtgtttgatgaattttcagtttcgacttgtggtg |
32163334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 42761122 - 42761176
Alignment:
| Q |
408 |
atatgtatgttaaatgtggtgatattggtgatgctcgttccgtgtttgatgaatt |
462 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
42761122 |
atatgtatggtaaatgcggtgagattggtgatgctcgtaaggtgtttgatgaatt |
42761176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University