View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_19 (Length: 471)
Name: NF13366_low_19
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 86 - 457
Target Start/End: Original strand, 32513764 - 32514143
Alignment:
| Q |
86 |
actttgatttcatcattgaaactaaaaactaaatgaaacacgtaccattaaaaaacaaagcttcaacttaagaaaataataataagatagtatgaaaaat |
185 |
Q |
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| T |
32513764 |
actttgatttcatcattgaaacgaaaaataaaatgaaacacgtaccattaaaaaacaaaacttcaacttaagaaaataataataagatagtatgaaaaat |
32513863 |
T |
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| Q |
186 |
caaagagtgagggaggataaactttcactttttcttctacattatttatgttttta-------tcatattcgtaccattttgtaccaaattgcaattagt |
278 |
Q |
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| T |
32513864 |
caaagagtgagggaggataaacttacactttttcttctacgttatttctgtttttatctcttgtcatattcgtaccattttgtaccaaattgcaattagt |
32513963 |
T |
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| Q |
279 |
cagtgaactattaaatcatctaaaaatgagctatatattttaagggagatatgtgtaagaaaatatgattctttgaaagcc-nnnnnnntattaatcgtt |
377 |
Q |
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| T |
32513964 |
tagtgaactattaaatcatctaaaaatgagctatatattttaagggagatatgtgtaagaaaatatgattctttgaaaaccaaaaaaaatattaatcgtt |
32514063 |
T |
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| Q |
378 |
tgattaggggatcatttttatccttccatgttttcggttttgttaaccctctaattgaaatgagatttcagtgttcattt |
457 |
Q |
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| T |
32514064 |
tgataaggggatcatttttatccttccatgttttctgttttgttaaccctctaattaaaatgagatttcagtgttcattt |
32514143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 32513593 - 32513657
Alignment:
| Q |
14 |
acaaaggtgagggaaggtagtagtggtattcaatatttcatgtctaattgtgtttctgaaaatga |
78 |
Q |
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| T |
32513593 |
acaaaggtgagggaaggtagtagtggtattcaatatttcatgtctaattgtgtttctgaaaatga |
32513657 |
T |
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