View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_20 (Length: 469)
Name: NF13366_low_20
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 23270431 - 23270884
Alignment:
| Q |
1 |
gtgaaaaaattttaaattattatagattaatagttgaatatgatgggaagtgtattccttacttccacgcgcgcttttgtgtgtgatttcaggattagaa |
100 |
Q |
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|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23270431 |
gtgagaaacttttacattattatagattaatagttgaatatgatgggaagtgtattccttacttccacgtgcgcttttgtgtgtgatttcaggattagaa |
23270530 |
T |
|
| Q |
101 |
gagagtgagacgtcatatatcaattaaaaactttaagacatcatatatataagttgcctcttttatgcatctaagattttactcatttataagcaatgtg |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23270531 |
gagagtgagacgtcatatctcaattaaaaactttaagacatcatatatataagtttcctcttttatgcatctaagattttactcatttataagcaatgtg |
23270630 |
T |
|
| Q |
201 |
aaacttgattgctcacacttgaaacccaacattcttcccattaattgtgaattcccaccttctataacatatcaaacttccactcccccacaccaaaccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23270631 |
aaacttgattgctcacacttgaaacccaacattcttcccattaattgtgaattcccaccttctataacatatcaaacttccactcccccacaccaaaccg |
23270730 |
T |
|
| Q |
301 |
aaccaaaactctaataccacttgttgaggagtccggatgtcatgagagcaacaacagatcaatgattcagggctgcaagagatggagatccaacatctgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23270731 |
aaccaaaactctaataccacttgttgaggagtccggatgtcatgagagcaacaacagatcaatgattcagggctgcaagagatggagatccaacatctcc |
23270830 |
T |
|
| Q |
401 |
atccaaactcacaagactagtatatgagtcgcctttcttgtatatccaatattt |
454 |
Q |
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| T |
23270831 |
atccaaactcacaagactagtatatgagtcgcctttcttgtatatccaatattt |
23270884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 20142754 - 20142317
Alignment:
| Q |
16 |
attattatagattaatagttgaatatgatgggaagtgtattccttacttc--cacgcgcgcttttgtgtgtgatttcaggattagaagagagtgagacgt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
20142754 |
attattatagattaatagttgaatatgatgggaagtgtattccttacttgtgcacacgcgcttttgtgtgtgacttcaggatgagaagagagtgagacgt |
20142655 |
T |
|
| Q |
114 |
catatatcaattaaaaactttaagacatcatatatataagttgcctcttttatgcatctaagattttactcatttataagcaatgtgaaacttgattgct |
213 |
Q |
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||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
20142654 |
catatctccattcaaaactttaagacatcatatatataagttgcctcttttatgcatctaacattttactcatttataagcaatgtgagacttgattgct |
20142555 |
T |
|
| Q |
214 |
cacacttgaaacccaacattcttcccattaattgtgaattcccaccttctataacatatcaaacttccactcccccacaccaaaccgaaccaaaactcta |
313 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20142554 |
cacacttgaaacccaacattcttcccatcaagtgtgaattcccaccttctataacatatcaaacttccactcccccacaccaaaccgaaccaaaactcta |
20142455 |
T |
|
| Q |
314 |
ataccacttgttgaggagtccggatgtcatgagagcaacaacagatcaatgattcagggctgcaagagatggagatccaacatctgcatccaaactcaca |
413 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| | |
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|
| T |
20142454 |
ataccacttgttgaggagtccggatgtcacgagagcaacaacagatcaatgattcaggagcgcaagagatggagacccaacatctccatccaaactcata |
20142355 |
T |
|
| Q |
414 |
agactagtatatgagtcgcctttcttgtatatccaatattt |
454 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
20142354 |
agactagtatatgagt---ctttcttgtatatccaatattt |
20142317 |
T |
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