View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_26 (Length: 354)
Name: NF13366_low_26
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 4554782 - 4554488
Alignment:
| Q |
22 |
aaataccttcctatacaacttcttgagaacgaggaagggaatttgattctcaagcattgctatatcattcaaaacagacaacatcttttcttctgtttta |
121 |
Q |
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| T |
4554782 |
aaataccttcctatatattttcttaagaacaaggaaggggatttaattttcaagcatggttacatcatttaaaacagacaacatcttttcctcagtttga |
4554683 |
T |
|
| Q |
122 |
aggattgagtcgttgttgaaagaagttgttgtttggttatccatgtaatcgccaagtctaatgagaagctccaacagaaaacaaccatctattatcatta |
221 |
Q |
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| T |
4554682 |
aggattaagttgttgttataagaagttgttgtttggttatccatgtaatcgccaagcctaatgagaagctccaatagaaaacaaccatctattatcatta |
4554583 |
T |
|
| Q |
222 |
ttttagcgatttcttctggttctttttcttcgacaatgttgttgttgctcccaccatagctagcacaaatcactttatctaacttgagaatgtca |
316 |
Q |
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| T |
4554582 |
ttttagcgatttcttctggttctttttcttcaacgatgttgttgttgctcccaccatagctagcacaaatcactttatctaacttaagaatgtca |
4554488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 339
Target Start/End: Complemental strand, 4590913 - 4590759
Alignment:
| Q |
185 |
agaagctccaacagaaaacaaccatctattatcattattttagcgatttcttctggttctttttcttcgacaatgttgttgttgctcccaccatagctag |
284 |
Q |
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| T |
4590913 |
agaaactccaacaaaaaacaaccatccaccaacattattttggctaattcttgtgattctgttgtttcgcagatgttgttgttgctcccaccatagctag |
4590814 |
T |
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| Q |
285 |
cacaaatcactttatctaacttgagaatgtcatagccacattctcttaaccttat |
339 |
Q |
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| T |
4590813 |
cacaaatcactttatctaacctgagaatgtcatcgccacattcttttaaccttat |
4590759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 4591078 - 4591018
Alignment:
| Q |
20 |
ggaaataccttcctatacaacttcttgagaacgaggaagggaatttgattctcaagcattg |
80 |
Q |
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| T |
4591078 |
ggaaataccttcctaaatatcttcttgagaataatgaagggaatttggttctcaagcattg |
4591018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 18521563 - 18521509
Alignment:
| Q |
26 |
accttcctatacaacttcttgagaacgaggaagggaatttgattctcaagcattg |
80 |
Q |
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| T |
18521563 |
accttcctatacaacttcttgagaacaatgaagggtatttggttctcaagcattg |
18521509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 24827686 - 24827734
Alignment:
| Q |
182 |
atgagaagctccaacagaaaacaaccatctattatcattattttagcga |
230 |
Q |
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| T |
24827686 |
atgagaagctccaacagaaaacatccatccactaacataattttagcga |
24827734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 24856086 - 24856126
Alignment:
| Q |
185 |
agaagctccaacagaaaacaaccatctattatcattatttt |
225 |
Q |
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|||||||||||||||||||||||||||| || ||| ||||| |
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| T |
24856086 |
agaagctccaacagaaaacaaccatctactaacataatttt |
24856126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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