View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_28 (Length: 344)
Name: NF13366_low_28
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 39642010 - 39641681
Alignment:
| Q |
1 |
atattttcgggtttgcctttgctttcggcacaccttctaatggtttcattggaaaacattttttcggtcttagtgattttccttctcagtcttttgatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39642010 |
atattttcgggtttgcctttgctttcggcacaccttctaatggtttcattggaaaacattttttcggtcttagtgattttccttctcagtcttttgatta |
39641911 |
T |
|
| Q |
101 |
tggatattttctatatcaatgggcttttgcaattgctgcagcaggaatcactagtggttcaattgctgagagaacacaatttgtttcttatttgatttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641910 |
tggatattttctatatcaatgggcttttgcaattgcttcagcaggaatcactagtggttcaattgctgagagaacacaatttgtttcttatttgatttat |
39641811 |
T |
|
| Q |
201 |
tcttcttttctaacaggtttagtttatccgattgttgctcattggttttggtctgctgatggttggggtagtccggttcggtctgaaaatcttttgtttg |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641810 |
tcgtcttttctaacaggtttagtttatccgattgttgctcattggttttggtctgctgatggttggggtagtccggttcggtctgaaaatcttttgtttg |
39641711 |
T |
|
| Q |
301 |
gttccggtgttattgattttgctggttgtg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
39641710 |
gttccggtgttattgattttgctggttgtg |
39641681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 46670196 - 46669878
Alignment:
| Q |
12 |
tttgcctttgctttcggcacaccttctaatggtttcattggaaaacattttttcggtcttagtgattttccttctcagtcttttgattatggatattttc |
111 |
Q |
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|||||| | ||||| || |||||||| || |||||||| |||||||||||||| ||||||| |||||| ||||| || ||||||||||| || | ||| | |
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| T |
46670196 |
tttgccctagcttttggaacaccttcaaacggtttcataggaaaacatttttttggtcttactgatttcccttcacaatcttttgattacggttttttcc |
46670097 |
T |
|
| Q |
112 |
tatatcaatgggcttttgcaattgctgcagcaggaatcactagtggttcaattgctgagagaacacaatttgtttcttatttgatttattcttcttttct |
211 |
Q |
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| | ||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||||||| || ||| | |
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| T |
46670096 |
tctttcaatgggcttttgccattgctgcagcagggatcacaagtggatcaattgctgagagaacacagttcgtttcttatttgatttattcgtcgttttt |
46669997 |
T |
|
| Q |
212 |
aacaggtttagtttatccgattgttgctcattggttttggtctgctgatggttggggtagtccggttcggtctgaaaatcttttgtttggttccggtgtt |
311 |
Q |
| |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46669996 |
aaccggtttagtttatccaattgttgctcattggttttggtctgctgatggttggggtagtccggttcggtctgaaaatcttttgtttggttctggtgtt |
46669897 |
T |
|
| Q |
312 |
attgattttgctggttgtg |
330 |
Q |
| |
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||||||||||||||||||| |
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| T |
46669896 |
attgattttgctggttgtg |
46669878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 17091282 - 17091218
Alignment:
| Q |
6 |
ttcgggtttgcctttgctttcggcacaccttctaatggtttcattggaaaacattttttcggtct |
70 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
17091282 |
ttcggttttgcctttgccttcggaacaccttcaaatggtttcataggaaaacatttcttcggtct |
17091218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 35416120 - 35416015
Alignment:
| Q |
162 |
attgctgagagaacacaatttgtttcttatttgatttattcttcttttctaacaggtttagtttatccgattgttgctcattggttttggtctgctgatg |
261 |
Q |
| |
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||||| |||||||| |||||||| | ||| | || ||||||||||| |||| ||||| |||||||| || ||| | |||||| ||||||| ||||||| |
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| T |
35416120 |
attgcagagagaactcaatttgtcgcctatctcatatattcttctttcttaaccggttttgtttatcccatcgtttcgcattgggtttggtccgctgatg |
35416021 |
T |
|
| Q |
262 |
gttggg |
267 |
Q |
| |
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|||||| |
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|
| T |
35416020 |
gttggg |
35416015 |
T |
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Back To:
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