View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13366_low_29 (Length: 335)
Name: NF13366_low_29
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 45460905 - 45460575
Alignment:
| Q |
1 |
acctcaacgaggccaaaacataacagaaagcatgcggatatcatcaaattcttctcccaatacaaagcaatgattagtgacatgagactagttgtcacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45460905 |
acctcaacgaggccaaaacataacagaaagcatgcagatatcatcaaattcttctcccaatacaaagcaatgattagtgacatgagactagttgtcacaa |
45460806 |
T |
|
| Q |
101 |
gcattccacatattatagccaaacctgccacaaattgtgaacttaattaattacactattatgattttaatgtcattaacaaacaatcatgctaactgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45460805 |
gcattccacatattatagccaaacctaccacaaattgtgaacttaattaattacactattatgattttaatgtcattaacaaacgatcatgctaactgaa |
45460706 |
T |
|
| Q |
201 |
tggtaaacaagttccatataaccatccttaatttaatcaaatcaaaagtactgtggttcggacataactgcactgtgcctgtgctggtagtatatattaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45460705 |
tggtaaacaagttccatataaccatccttaatttaatcaaatcaaaagtactgtggttcggacataactgcactgtgcctgtgctggtagtatatattaa |
45460606 |
T |
|
| Q |
301 |
acatcaattcttttaactgcattccctgttt |
331 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
|
|
| T |
45460605 |
acatcaattcttttatctgcattccctgttt |
45460575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University