View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_3 (Length: 799)
Name: NF13366_low_3
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 20 - 548
Target Start/End: Complemental strand, 1865010 - 1864476
Alignment:
| Q |
20 |
atactagagttgcatataagtgtcagaaagtaagaaggaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgatactg |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865010 |
atactagagttgcatataagtgtcagaaagtaagaagaaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgatactg |
1864911 |
T |
|
| Q |
120 |
aaatccggtagatgtaggaaatgatgaagcttttatttgtttcgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgc |
219 |
Q |
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||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1864910 |
aaatccgatagatgtaggaaatgatgaaacttttatttgttccgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgc |
1864811 |
T |
|
| Q |
220 |
ttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttcttctttaagcttttgccaaactaaaaagacgagaaggaaaaagaagcttaata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1864810 |
ttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttcttctttaagcttttgccaaactaaaaagacgagaaggaaaaagaaacttaata |
1864711 |
T |
|
| Q |
320 |
aaacaattgcggtttttattataacaaaaatgtaaaaatcgttgggatggatatacattgaaagtctataaattaaattatcaattgcaacttatgtgtg |
419 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1864710 |
aaactattgcggtttttattataacaaaaatgtaaaaatcgttgggatggatatacattgaaagtctataaattaaattatcaattgcaacttgtgtgtg |
1864611 |
T |
|
| Q |
420 |
tgtg------tttatttatcaacctcttaaaaatgatagtccaaatattaaaccatagcaattataaagacagtgatggaaaatgtaagattaaataaac |
513 |
Q |
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| T |
1864610 |
tgtgtgtgtttttatttatcaacctcttaaaaatgatagtccaaatattaaaccatagcaattataaaggcagtgatggaaaatgtaagattaaataaac |
1864511 |
T |
|
| Q |
514 |
aagaattgaaaattaaataaaacatgttacattta |
548 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
1864510 |
aagaattgaaaattaaataaaacatgttacattta |
1864476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 547 - 782
Target Start/End: Complemental strand, 1863685 - 1863450
Alignment:
| Q |
547 |
taatgaggcatataaatttgttgttagcaatttctcatacatgtagggtgaaccaaacagaatatagaataagtaagagatttcaggaaagggaaatgag |
646 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1863685 |
taatgaggcatataaatttgttgttagcaatttctcatacatgtagggtgaaccaaacagaatatagaataagtaagagatttcaggaaagggaaatgag |
1863586 |
T |
|
| Q |
647 |
ggaaaagaaggaacacaattacgcaacactattggtaaacctttgataacttatcaagtcttaatattaacccaactatgaaaagtcatgtgctcctcga |
746 |
Q |
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| T |
1863585 |
ggaaaagaaggaacacaattacgcaacactattggtaaacctttgataacttatcaagtcttaatattaacccaactatgaaaagtcatgtgctcctcga |
1863486 |
T |
|
| Q |
747 |
acctagctactgattcgaaatattgttggtacatag |
782 |
Q |
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| T |
1863485 |
acctagctactgattcgaaatattgttgttacatag |
1863450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 163 - 293
Target Start/End: Original strand, 35441487 - 35441617
Alignment:
| Q |
163 |
gagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggat |
262 |
Q |
| |
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||||||||||||| |||| ||| ||||||||| ||||| | || |||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
35441487 |
gagtccattaattctttttgtttttccaacaattcattgaatttctctatttgttgcttcaacgccaatcttgtataataagctttgaagaactcaggat |
35441586 |
T |
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| Q |
263 |
tttcttctttaagcttttgccaaactaaaaa |
293 |
Q |
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||| ||| |||||||||||||||||| |||| |
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| T |
35441587 |
tttgttcattaagcttttgccaaactgaaaa |
35441617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 316
Target Start/End: Original strand, 35449928 - 35450081
Alignment:
| Q |
163 |
gagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggat |
262 |
Q |
| |
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||||| ||||||| ||||| ||||| || ||| ||||||| | || ||||| | |||||||||||||||||| || |||||||| |||||||| |||| |
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| T |
35449928 |
gagtctattaattccttttgtttatgcattaatttgttgaattcctctatttgcttcttcaacgccaatcttgtatagtaagcttggaagaactctggat |
35450027 |
T |
|
| Q |
263 |
tttcttctttaagcttttgccaaactaaaaagacgagaaggaaaaagaagctta |
316 |
Q |
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||| ||||| |||| ||||||||||| |||||| || |||||||||| |||| |
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| T |
35450028 |
tttgttcttcaagcctttgccaaactgaaaagatgaaggggaaaaagaaactta |
35450081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 293
Target Start/End: Original strand, 51575693 - 51575962
Alignment:
| Q |
24 |
tagagttgcatataagtgtcagaaagtaagaaggaacctactagaattgatatgtgatccattaaaatttggtggtgatggaacaacgtgatactgaaat |
123 |
Q |
| |
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||||||||||| ||||||| ||||| ||||||| | | |||||| || |||||||||||||||| ||||| || ||||||||||||| |||| |||||| |
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| T |
51575693 |
tagagttgcatttaagtgtgagaaaataagaagaatcttactagcatggatatgtgatccattagaattttgtagtgatggaacaacatgatgatgaaat |
51575792 |
T |
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| Q |
124 |
ccggtagatgtaggaaatgatgaagcttttatttgtttcgagtccattaatttcttttatttatccaacaatgtgttgaactgttcaatttgttgcttca |
223 |
Q |
| |
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|| |||| |||| | |||| | || | |||||| |||| || |||||| | ||| || |||| ||||| ||| | |||||||||||||| | || |
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| T |
51575793 |
ccattagagataggtagagatgcaactatggtttgttccgagaccgttaattgcctttgattctccagcaatgcattgtattgttcaatttgttgataca |
51575892 |
T |
|
| Q |
224 |
acgccaatcttgtgtaataagcttgaaagaactcaggattttcttctttaagcttttgccaaactaaaaa |
293 |
Q |
| |
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| ||||||||||| |||||| ||| |||||| || ||||||| |||||||| | |||||||||||||| |
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| T |
51575893 |
aggccaatcttgtataataatctttgaagaacgcatcattttctgctttaagcctatgccaaactaaaaa |
51575962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 495 - 552
Target Start/End: Original strand, 51576228 - 51576285
Alignment:
| Q |
495 |
aatgtaagattaaataaacaagaattgaaaattaaataaaacatgttacatttaatga |
552 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||| |||||||||| ||| ||||||| |
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| T |
51576228 |
aatgtgagattaagtaaacaagaattgaaaattaattaaaacatgtaacaattaatga |
51576285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 7239152 - 7239227
Alignment:
| Q |
205 |
tgttcaatttgttgcttcaacgccaatcttgtgtaataagcttgaaagaactcaggattttcttctttaagctttt |
280 |
Q |
| |
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||||||||||| ||||||||| ||| |||||| |||||||||| ||||| |||| ||| | ||||| |||||||| |
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| T |
7239152 |
tgttcaatttgctgcttcaacaccactcttgtataataagctttgaagaattcagcattatgttcttcaagctttt |
7239227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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