View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_31 (Length: 326)
Name: NF13366_low_31
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 8349002 - 8349297
Alignment:
| Q |
14 |
tgagaagaacgatcattgttatcggtagcaaaagaagattgttggtaagttcaagaaaaataacacaaagtgaaacagtcattctcattgaccctgccat |
113 |
Q |
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| T |
8349002 |
tgagaagaacgatcattgttatcggtagcaaaagaagattgttggtaagttcaagaaagataacacaaagtgaaacagtcattctcattgaccctgccat |
8349101 |
T |
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| Q |
114 |
caaggaagctgcaccaagaacagctaacaaaccatgatcaatatttgtgtaagacctcattatgattccgaggagacgtccataacctgaaccgattaat |
213 |
Q |
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| T |
8349102 |
caaggaagctgcaccaagaacagctaacaaaccatgatcaatatttgtgtaaggcctcattatgattccgaggagacgtccataacccgaaccgattaat |
8349201 |
T |
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| Q |
214 |
atgataggtnnnnnnngtcctgatggaacagcaatgccaaaagtgattaaacctaatatgcaatatagtgtgaaaaatatcaagattgaaaaaggt |
309 |
Q |
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| T |
8349202 |
atgataggtaaaaaaagtcctgatggaacagcaatgccaaaagtgattaaacctaatatgcaatatagtgtgaaaaatatcaagattgaaaaaggt |
8349297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 10399893 - 10399770
Alignment:
| Q |
19 |
agaacgatcattgttatcggtagcaaaagaagattgttggtaagttcaagaaaaataacacaaagtgaaacagtcattctcattgaccctgccatcaagg |
118 |
Q |
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||||| ||||||||||| || || | ||| |||||| ||||||||||||| ||||| |||||||| || |||||||| ||||| || || ||||| | || |
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| T |
10399893 |
agaacaatcattgttattggcagtagaagcagattgctggtaagttcaaggaaaatcacacaaagggatacagtcatcctcatggaaccagccatgaggg |
10399794 |
T |
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| Q |
119 |
aagctgcaccaagaacagctaaca |
142 |
Q |
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| T |
10399793 |
aggctgcaccaagtacagcaaaca |
10399770 |
T |
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