View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13366_low_36 (Length: 275)

Name: NF13366_low_36
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13366_low_36
NF13366_low_36
[»] chr2 (5 HSPs)
chr2 (1-271)||(13447990-13448260)
chr2 (92-271)||(13454552-13454731)
chr2 (93-271)||(13439919-13440097)
chr2 (1-93)||(13454479-13454571)
chr2 (15-93)||(13439859-13439937)
[»] chr5 (2 HSPs)
chr5 (94-271)||(28385054-28385231)
chr5 (102-269)||(12540413-12540580)
[»] chr4 (5 HSPs)
chr4 (95-264)||(48965050-48965219)
chr4 (94-268)||(48967178-48967352)
chr4 (94-258)||(48961011-48961175)
chr4 (106-265)||(48957876-48958035)
chr4 (152-239)||(48912659-48912746)
[»] chr8 (1 HSPs)
chr8 (93-263)||(12641771-12641941)
[»] chr7 (1 HSPs)
chr7 (105-271)||(3417809-3417975)
[»] chr6 (1 HSPs)
chr6 (128-267)||(12590455-12590594)
[»] scaffold0536 (2 HSPs)
scaffold0536 (212-264)||(6800-6852)
scaffold0536 (215-267)||(1739-1791)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 13447990 - 13448260
Alignment:
Q  1 acgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttttaaggtctctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447990 acgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttttaaggtctctc 13448089  T
Q  101 gatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13448090 gatcttttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagcttgtatagctttttctccaaactctcgagcacgta 13448189  T
Q  201 gcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448190 gcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 13448260  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 92 - 271
Target Start/End: Original strand, 13454552 - 13454731
Alignment:
Q  92 aggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctc 191  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||||    
T  13454552 aggtttctcaatcttttaagttcatcaatcaaagccaacaaattattataagatgagccacctttttgaatagcttgtgtagccttttctccaaactctc 13454651  T
Q  192 gagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 271  Q
    ||||| ||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  13454652 gagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctc 13454731  T

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Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 93 - 271
Target Start/End: Original strand, 13439919 - 13440097
Alignment:
Q  93 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 192  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |    
T  13439919 ggtctctcaatcttttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttg 13440018  T
Q  193 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 271  Q
    |||| ||||||| ||||||| |||||||||||||   |||||||||||||| ||||||||||||||| |||| ||||||    
T  13440019 agcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacagccttctctatgttatccctgctc 13440097  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 13454479 - 13454571
Alignment:
Q  1 acgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttttaag 93  Q
    ||||||| || |||||||||| |||||||||||||| ||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||||||    
T  13454479 acgaaacaacaatgttattagaaaaagttgaaaaaacttacacaatgctcctttgaattaatcatgcggcttgaggtttctcaatcttttaag 13454571  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 13439859 - 13439937
Alignment:
Q  15 ttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttttaag 93  Q
    ||||||||| | ||||||||||  ||||||||| || ||||||||||||||   ||||| |||||||||||||||||||    
T  13439859 ttattaggataggttgaaaaaacatagacaatagtcctttgaattaatcatgtcgcttggggtctctcaatcttttaag 13439937  T

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Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 94 - 271
Target Start/End: Original strand, 28385054 - 28385231
Alignment:
Q  94 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 193  Q
    ||||||| |||||||||||||||| || ||||| ||||||||||||||||| || || ||||||| || |||| || |||| || ||||| |||||||||    
T  28385054 gtctctcaatcttttaagttcgtcgattaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcga 28385153  T
Q  194 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 271  Q
    ||| || | || ||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| |||||||||||    
T  28385154 gcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgttatctctgctc 28385231  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 269
Target Start/End: Original strand, 12540413 - 12540580
Alignment:
Q  102 atcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtag 201  Q
    ||||||||| |||||| |||||||  ||||||||||||| ||| || || |||||||||| |||| || |||| || ||||||| |||||| ||| ||||    
T  12540413 atcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtag 12540512  T
Q  202 cctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgc 269  Q
     || |||||||||||||||| |||||| |||||||||||||| | |||||||||||||| ||||||||    
T  12540513 tctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgc 12540580  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 95 - 264
Target Start/End: Original strand, 48965050 - 48965219
Alignment:
Q  95 tctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgag 194  Q
    |||||| ||||||| || || |||||||| || |||||||| |||| ||||||||| ||||||||||| ||| || |||| ||||||||||||||| |||    
T  48965050 tctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgag 48965149  T
Q  195 catgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatc 264  Q
    || |    || || || |||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  48965150 cacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatc 48965219  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 268
Target Start/End: Original strand, 48967178 - 48967352
Alignment:
Q  94 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 193  Q
    |||||||  ||||||||| || ||||||||||| |  ||||||||||||||| |||| ||||||||||  ||| || |||| ||||||||||| ||||||    
T  48967178 gtctctcattcttttaagatcatcaatcaaagcaagtaaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcga 48967277  T
Q  194 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctg 268  Q
    ||| || | ||||| || |||||||||||  ||  |||||||||||| |||| ||| ||||||||| ||||||||    
T  48967278 gcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatcttcttatagctttctctatgttatctctg 48967352  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 48961011 - 48961175
Alignment:
Q  94 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 193  Q
    ||||||| |||||||||| || ||||| ||||||||||||||||||| ||| ||||| ||| |||||| ||||  |||||| || || ||||||||||||    
T  48961011 gtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcga 48961110  T
Q  194 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctat 258  Q
    ||| |  | || |||| ||| |||||||||||||||||||| ||| | || || |||||||||||    
T  48961111 gcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctat 48961175  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 265
Target Start/End: Original strand, 48957876 - 48958035
Alignment:
Q  106 tttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctg 205  Q
    |||||| || |||||||||| ||||||||| |||| ||| || || |||||||||| |||| || |||| |||||||| |||||| ||||| |  |  ||    
T  48957876 tttaagatcatcaatcaaagacaacaaattgttatgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttg 48957975  T
Q  206 atattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatct 265  Q
    || |  |||||||||||||||||||||||||||||| | |||||||| ||||| ||||||    
T  48957976 atttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatct 48958035  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 48912746 - 48912659
Alignment:
Q  152 ccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatc 239  Q
    ||||||| ||| || ||| ||||||| || |||||||||||||||||| | ||||| || |||||||||||||||| |||||||||||    
T  48912746 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 48912659  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 12641941 - 12641771
Alignment:
Q  93 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 192  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||| |||||| || ||||||| || ||| ||| |||| ||||  ||||||||| |    
T  12641941 ggtctctcgatcttttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtagcctttttcccaaactcttg 12641842  T
Q  193 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctat 263  Q
    |||| || | ||||| |  | ||||||||||||| |||||||||||||||| ||||| |||||||| ||||    
T  12641841 agcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctatactat 12641771  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 105 - 271
Target Start/End: Complemental strand, 3417975 - 3417809
Alignment:
Q  105 ttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcct 204  Q
    ||||||||||||| |||||||  |||||||||| ||  || || || ||||||||||||||| || |||| || ||||||| |||||||||| |||| ||    
T  3417975 ttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtct 3417876  T
Q  205 gatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 271  Q
     |||  |||||| ||||||| || ||||||||||||||| |  ||||||||||||  ||||||||||    
T  3417875 cataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctctgctc 3417809  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 267
Target Start/End: Complemental strand, 12590594 - 12590455
Alignment:
Q  128 aacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccac 227  Q
    ||||||||||||| ||| ||||| |||| ||||| |||| || |||||||||| || |||||| ||  | || | ||||| |  |||||||||   ||||    
T  12590594 aacaaattattattagaggagccaccttgttgaacagctagtctagctttttcccctaactcttgactacgtcgtctgatttcctcagcttcaatgccac 12590495  T
Q  228 cgtccatcaatctccttacagccttctctatgctatctct 267  Q
    | ||||||||||| || ||||| |||| ||||||||||||    
T  12590494 catccatcaatcttctcacagcattctttatgctatctct 12590455  T

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Target: scaffold0536 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 6852 - 6800
Alignment:
Q  212 tcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatc 264  Q
    |||||||| |||||||| |||||||||||||| ||||||||||| || |||||    
T  6852 tcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatc 6800  T

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Target: scaffold0536; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 1791 - 1739
Alignment:
Q  215 gcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctct 267  Q
    ||||||||||||| ||||||||| ||||||| |||||||| ||| | ||||||    
T  1791 gcttcatcaccactgtccatcaacctccttaaagccttctttatacgatctct 1739  T

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