View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_41 (Length: 239)
Name: NF13366_low_41
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 27090577 - 27090794
Alignment:
| Q |
1 |
ctatgctgctccatgtttgaatgatttttaggtatcctcgacaatccgtgatggctcgttccatggccaccacatctacaaccattacaagagtccattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27090577 |
ctatgctgctccatgtttgaatgatttttaggtatcctcgacgatccgtgatggctcgttccatggccaccacatctacaaccattacaatagtccattt |
27090676 |
T |
|
| Q |
101 |
tcgggtgcaaaaaatatttggcgaaattacttgtgtctccctcttctatatgccttgatctaatgcattgtagattgttatgtttggctctagcttcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090677 |
tcgggtgcaaaaaatatttggcgaaattacttgtgtctccctcttctatatgtcttgatctaatgcattgtagattgttatgtttggctctagcttcttc |
27090776 |
T |
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| Q |
201 |
tactattgttgggcaatg |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
27090777 |
tactattgttgggcaatg |
27090794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27187724 - 27187507
Alignment:
| Q |
1 |
ctatgctgctccatgtttgaatgatttttaggtatcctcgacaatccgtgatggctcgttccatggccaccacatctacaaccattacaagagtccattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27187724 |
ctatgctgctccatgtttgaatgatttttaggtatcctcgacgatccgtgatggctcgttccatggccaccacatctacaaccattacaatagtccattt |
27187625 |
T |
|
| Q |
101 |
tcgggtgcaaaaaatatttggcgaaattacttgtgtctccctcttctatatgccttgatctaatgcattgtagattgttatgtttggctctagcttcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27187624 |
tcgggtgcaaaaaatatttggcgaaattacttgtgtctccctcttctatatgtcttgatctaatgcattgtagattgttatgtttggctctagcttcttc |
27187525 |
T |
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| Q |
201 |
tactattgttgggcaatg |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
27187524 |
tactattgttgggcaatg |
27187507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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