View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13366_low_42 (Length: 238)

Name: NF13366_low_42
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13366_low_42
NF13366_low_42
[»] chr7 (4 HSPs)
chr7 (20-238)||(36282332-36282550)
chr7 (24-211)||(6770429-6770624)
chr7 (63-119)||(14088720-14088776)
chr7 (63-119)||(14398738-14398794)
[»] scaffold0092 (1 HSPs)
scaffold0092 (24-122)||(46400-46498)
[»] chr3 (4 HSPs)
chr3 (65-122)||(43135203-43135260)
chr3 (24-122)||(17036169-17036267)
chr3 (66-122)||(37382974-37383030)
chr3 (69-122)||(20610042-20610095)
[»] chr8 (8 HSPs)
chr8 (63-122)||(32342769-32342828)
chr8 (63-122)||(32355256-32355315)
chr8 (63-122)||(32359374-32359433)
chr8 (63-122)||(32371910-32371969)
chr8 (28-210)||(12336661-12336846)
chr8 (63-122)||(14051246-14051305)
chr8 (135-206)||(14051324-14051397)
chr8 (63-119)||(39688161-39688217)
[»] chr5 (4 HSPs)
chr5 (135-211)||(37394882-37394960)
chr5 (50-118)||(1279764-1279832)
chr5 (66-122)||(42615045-42615101)
chr5 (54-122)||(191952-192019)
[»] chr2 (5 HSPs)
chr2 (135-211)||(1542803-1542881)
chr2 (63-119)||(18111916-18111972)
chr2 (135-211)||(24983905-24983981)
chr2 (63-117)||(1542728-1542783)
chr2 (37-122)||(19952536-19952621)
[»] chr1 (2 HSPs)
chr1 (39-122)||(17874708-17874791)
chr1 (69-122)||(26273632-26273685)
[»] chr6 (4 HSPs)
chr6 (66-120)||(4231741-4231795)
chr6 (63-122)||(6418796-6418855)
chr6 (63-121)||(24697905-24697963)
chr6 (183-219)||(10397700-10397736)
[»] chr4 (3 HSPs)
chr4 (135-224)||(13968319-13968408)
chr4 (64-120)||(3240442-3240498)
chr4 (183-211)||(52373943-52373971)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 36282550 - 36282332
Alignment:
Q  20 acagggggcggagccaacacccggtgactccagacatttacctgggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccact 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36282550 acagggggcggagccaacacacggtgactccagacatttacctgggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccact 36282451  T
Q  120 taannnnnnnnnagccaaactcaatattttaacacgcgcacacaagaattcccgactctataatttttgcacagactctataaaattcctggttgcgcca 219  Q
    |||         ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  36282450 taatttttttttagccaaactcaatattttaacacgcgcacacaagaattcccaactctataatttttgcacaggctctataaaatttctggttgcgcca 36282351  T
Q  220 ttgatagaagtgctttgac 238  Q
    ||||| |||||||||||||    
T  36282350 ttgatggaagtgctttgac 36282332  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 6770429 - 6770624
Alignment:
Q  24 ggggcggagccaacacccggtgactccagacatttacctgggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaan 123  Q
    |||||||| ||| ||||||| ||| || | ||||| ||||||||||||| ||| |||||| ||||||  |||||   ||||||||||||||||||||||     
T  6770429 ggggcggaaccaccacccggcgaccccgggcatttgcctgggctcaatcaatattttctttatatttttcccaactaaatagcccattaacccacttaaa 6770528  T
Q  124 nnnnnnnna------gccaaactcaatattttaacacgcgcac--acaagaattcccgactctataatttttgcacagactctataaaattcctgg 211  Q
            |      | ||||||||||||||| ||||||||||  |||||||||   | |||||||| |||||| || ||||||||||||||||||    
T  6770529 aaaaatacaaaattgggcaaactcaatattttcacacgcgcacgcacaagaatttatggctctataaattttgcccaaactctataaaattcctgg 6770624  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 14088720 - 14088776
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccact 119  Q
    ||||||||||||||||||||| |||| |||| ||| ||| |||||||||||||||||    
T  14088720 gggctcaatcgatactttctttatatatggctcaacccattagcccattaacccact 14088776  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 14398738 - 14398794
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccact 119  Q
    ||||||||||||||||||||| |||| |||| ||| ||| |||||||||||||||||    
T  14398738 gggctcaatcgatactttctttatatatggctcaacccattagcccattaacccact 14398794  T

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Target: scaffold0092 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 46498 - 46400
Alignment:
Q  24 ggggcggagccaacacccggtgactccagacatttacctgggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    |||| ||||||| |||| |||||| || | ||||| || ||||||||||||||||||||| |||||| |||||| | |||||  |||||||||||||||    
T  46498 ggggtggagccaccacctggtgaccccgggcatttgcccgggctcaatcgatactttctttatattttgcccaaccaaatagttcattaacccacttaa 46400  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 43135203 - 43135260
Alignment:
Q  65 gctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||||    
T  43135203 gctcaatcgatactttctttatatatggcccaatgcaatagtccattaacccacttaa 43135260  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 17036169 - 17036267
Alignment:
Q  24 ggggcggagccaacacccggtgactccagacatttacctgggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    |||||||||||| || |||| ||| || |||| |  || ||||||||||||| ||||||| |||||| | |||| ||||||||| ||||||||||||||    
T  17036169 ggggcggagccaccatccggcgacaccggacactcgcccgggctcaatcgattctttctttatatttcggccaacccaatagcctattaacccacttaa 17036267  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 37383030 - 37382974
Alignment:
Q  66 ctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    |||||||||||||||||  |||| ||| |||| ||||||||||||||||||||||||    
T  37383030 ctcaatcgatactttctgtatatatggtccaacccaatagcccattaacccacttaa 37382974  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 20610042 - 20610095
Alignment:
Q  69 aatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||||||||||||| |||||| |  ||  ||||||||||||||||||||||||    
T  20610042 aatcgatactttctttatattttgttcagcccaatagcccattaacccacttaa 20610095  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 32342769 - 32342828
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||||||||||||||||||| ||||| || |||| ||||||| ||||||||||||||||    
T  32342769 gggctcaatcgatactttctttatattaggtccaacccaatagtccattaacccacttaa 32342828  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 32355256 - 32355315
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||||||||||||||||||| ||||| || |||| ||||||| ||||||||||||||||    
T  32355256 gggctcaatcgatactttctttatattaggtccaacccaatagtccattaacccacttaa 32355315  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 32359374 - 32359433
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||||||||||||||||||| ||||| || |||| ||||||| ||||||||||||||||    
T  32359374 gggctcaatcgatactttctttatattaggtccaacccaatagtccattaacccacttaa 32359433  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 32371910 - 32371969
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||||||||||||||||||| ||||| || |||| ||||||| ||||||||||||||||    
T  32371910 gggctcaatcgatactttctttatattaggtccaacccaatagtccattaacccacttaa 32371969  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 12336661 - 12336846
Alignment:
Q  28 cggagccaacacccggtgactccagacatttacctgggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaannnnn 127  Q
    |||||||| || |||| ||| || |||| | ||| ||| ||||| |||| |||||| |||||||||||||||||||| || |||||| |||||||         
T  12336661 cggagccaccatccggcgaccccggacactcacccgggttcaattgata-tttctttatatttggcccaatccaataacctattaactcacttaatttta 12336759  T
Q  128 nnnnagc-caaactcaatatttta-acacgcgcac--acaagaattcccgactctataatttttgcacagactctataaaattcctg 210  Q
         |  |||||||||||||||  ||||||||||  ||||||||||| | ||| || |||||||||||  ||||||||||||||||    
T  12336760 tttttgggcaaactcaatatttttcacacgcgcacgcacaagaattcctggctccattatttttgcacatgctctataaaattcctg 12336846  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 14051246 - 14051305
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||||||||  || |||||| ||||||||||||| | ||||||||||||| ||||||||    
T  14051246 gggctcaatcagtattttctttatatttggcccaacctaatagcccattaagccacttaa 14051305  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 14051324 - 14051397
Alignment:
Q  135 caaactcaatattttaacacgcgca--cacaagaattcccgactctataatttttgcacagactctataaaatt 206  Q
    ||||||||||||||| |||||||||  || || |||||| | |||||||||||||||  ||||| |||||||||    
T  14051324 caaactcaatattttcacacgcgcacgcataataattcctggctctataatttttgcctagactttataaaatt 14051397  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 39688217 - 39688161
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccact 119  Q
    ||||||||||||||||||  |||||||| |||||| | ||||| ||||||| |||||    
T  39688217 gggctcaatcgatacttttatcatatttcgcccaacctaatagtccattaatccact 39688161  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 37394882 - 37394960
Alignment:
Q  135 caaactcaatattttaacacgcgcac--acaagaattcccgactctataatttttgcacagactctataaaattcctgg 211  Q
    ||||||||||||||| ||| |||| |  ||||||||||  ||||||||||||||||| |||||||||||||||| ||||    
T  37394882 caaactcaatatttttacatgcgcccgcacaagaattcttgactctataatttttgctcagactctataaaatttctgg 37394960  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 1279764 - 1279832
Alignment:
Q  50 cagacatttacctgggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccac 118  Q
    ||||||||| || || |||||||||||||||||| |||| || |||||  |||||||||||||||||||    
T  1279764 cagacatttgcccggactcaatcgatactttctttatatatgacccaactcaatagcccattaacccac 1279832  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 42615101 - 42615045
Alignment:
Q  66 ctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    |||||||||||||||||| ||||||||  ||| ||||||| ||||||| ||||||||    
T  42615101 ctcaatcgatactttctttatatttggttcaacccaatagtccattaatccacttaa 42615045  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 191952 - 192019
Alignment:
Q  54 catttacctgggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||| || ||| ||||||| ||||||||| |||| || | ||| ||||||||||||||||||||||||    
T  191952 catttgcccgggttcaatcggtactttctttatatatgacacaa-ccaatagcccattaacccacttaa 192019  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 1542803 - 1542881
Alignment:
Q  135 caaactcaatattttaacacgcgcac--acaagaattcccgactctataatttttgcacagactctataaaattcctgg 211  Q
    ||||||||||||||| |||||||| |  ||||||||||  |||||| |||||||||| ||| |||||||||||||||||    
T  1542803 caaactcaatattttcacacgcgcgcgcacaagaattcttgactctttaatttttgcccaggctctataaaattcctgg 1542881  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 18111972 - 18111916
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccact 119  Q
    |||||||||| ||||||| ||||||||| ||||| |||||||| |||||||||||||    
T  18111972 gggctcaatcaatacttttttcatatttcgcccagtccaatagtccattaacccact 18111916  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 24983905 - 24983981
Alignment:
Q  135 caaactcaatattttaaca--cgcgcacacaagaattcccgactctataatttttgcacagactctataaaattcctgg 211  Q
    ||||||||||||||| |||  ||||| |||||||||||   ||||||  |||||||| |||||||||||||||||||||    
T  24983905 caaactcaatattttcacatgcgcgcgcacaagaattcttcactcta--atttttgcccagactctataaaattcctgg 24983981  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 1542728 - 1542783
Alignment:
Q  63 gggctcaatcgatactttctt-catatttggcccaatccaatagcccattaaccca 117  Q
    |||||||||||||||||| || ||||||| |||||| ||||||| |||||||||||    
T  1542728 gggctcaatcgatactttttttcatatttcgcccaacccaatagtccattaaccca 1542783  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 19952621 - 19952536
Alignment:
Q  37 cacccggtgactccagacatttacctgggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||||| ||| ||||||| |  ||||| ||||||||||| |||||| |||| || ||||   |||||||||||||||||| ||||    
T  19952621 cacccggcgaccccagacactcgcctggactcaatcgatattttctttatatatgacccacctcaatagcccattaacccaattaa 19952536  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 17874708 - 17874791
Alignment:
Q  39 cccggtgactccagacatttacctgggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||| ||| || |||| ||| |||||||||||| |||||||||| ||| | || |||| |||||||||||||||| |||||||    
T  17874708 cccggcgaccccggacacttatctgggctcaatcaatactttctttatactaggtccaacccaatagcccattaactcacttaa 17874791  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 26273685 - 26273632
Alignment:
Q  69 aatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    ||||||||||||||| |||| |||||||| ||||||||| ||||||| ||||||    
T  26273685 aatcgatactttctttatatatggcccaacccaatagccaattaaccaacttaa 26273632  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 4231795 - 4231741
Alignment:
Q  66 ctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccactt 120  Q
    |||||||||||||||||| ||||||||||||| | ||||| ||||||| ||||||    
T  4231795 ctcaatcgatactttctttatatttggcccaaccaaatagtccattaatccactt 4231741  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 6418855 - 6418796
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccacttaa 122  Q
    |||||||||||| |||||||| |||||| |||||| | |||||| |||||| ||||||||    
T  6418855 gggctcaatcgacactttctttatatttcgcccaaccaaatagctcattaagccacttaa 6418796  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 24697963 - 24697905
Alignment:
Q  63 gggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccactta 121  Q
    |||||||||||||| ||| |||| ||| ||||||| |||| ||||||||||| ||||||    
T  24697963 gggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacactta 24697905  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 10397736 - 10397700
Alignment:
Q  183 tttttgcacagactctataaaattcctggttgcgcca 219  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  10397736 tttttgcccagactctataaaattcctggttccgcca 10397700  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 13968319 - 13968408
Alignment:
Q  135 caaactcaatattttaacacgcgca--cacaagaattcccgactctataatttttgcacagactctataaaattcctggttgcgccattgat 224  Q
    ||||||||||||||| ||| ||||   |||||||||||  |||||||  |||||||| ||||||||||||||||||||| | ||||| ||||    
T  13968319 caaactcaatattttcacatgcgccagcacaagaattcttgactcta--atttttgctcagactctataaaattcctggctccgccactgat 13968408  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 3240498 - 3240442
Alignment:
Q  64 ggctcaatcgatactttcttcatatttggcccaatccaatagcccattaacccactt 120  Q
    ||||||||||||| |||||| ||| | || |||| ||||||||||||||||||||||    
T  3240498 ggctcaatcgatattttctttatactaggtccaacccaatagcccattaacccactt 3240442  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 52373943 - 52373971
Alignment:
Q  183 tttttgcacagactctataaaattcctgg 211  Q
    |||||||||||||||||||||||||||||    
T  52373943 tttttgcacagactctataaaattcctgg 52373971  T

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