View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13366_low_43 (Length: 235)
Name: NF13366_low_43
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_43 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 26202564 - 26202776
Alignment:
| Q |
1 |
tatcagtttctccaggtggatattgttggtttatcaagaacagatacattagtgatcttgagctattagttccatccatttactaaggctttagaccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26202564 |
tatcagtttctccaggtggatattgttggtttatcaagaacagatacattagtgatcttgagctattagttccatcaatttactaaggctttagaccatt |
26202663 |
T |
|
| Q |
101 |
gaataagtaattatttggagagaaatatccaagagaatttgacatggtctgtgaattacttcagaatgctgttgaaggtatctctaaattagtaacattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26202664 |
gaataagtaattatttggagagaaatatcc------------catggtctgtgaattacttcagaatgctattgaaggtatctctaaattagtaacattt |
26202751 |
T |
|
| Q |
201 |
ccaacaattccatgttcggcctttg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26202752 |
ccaacaattccatgttcggcctttg |
26202776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 26111713 - 26111750
Alignment:
| Q |
92 |
tagaccattgaataagtaattatttggagagaaatatc |
129 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
26111713 |
tagaccattgaataagtaagtatttggagaggaatatc |
26111750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 26236427 - 26236476
Alignment:
| Q |
101 |
gaataagtaattatttggagagaaatatccaagagaatttgacatggtct |
150 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| | |||||| ||||||||| |
|
|
| T |
26236427 |
gaataagtaattatttggagaggaatttccatgggaattttacatggtct |
26236476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26114114 - 26114150
Alignment:
| Q |
1 |
tatcagtttctccaggtggatattgttggtttatcaa |
37 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
26114114 |
tatcagtttctccaagtggatgttgttggtttatcaa |
26114150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 26236367 - 26236411
Alignment:
| Q |
36 |
aagaacagatacattagtgatcttgagctattagttccatccatt |
80 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| || |||||||| |
|
|
| T |
26236367 |
aagaacagatgcattagtgatcttgagcgattaattgcatccatt |
26236411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University