View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13366_low_47 (Length: 226)
Name: NF13366_low_47
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 170
Target Start/End: Complemental strand, 418582 - 418423
Alignment:
| Q |
7 |
tgatttatagctgagaacatttatattggaatcccaagccgtcaagctgtctcctatatggaagctatatagctgtactactaaactcagtaataatatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
418582 |
tgatttatagctgagaacatttatattggaatcccaagccgtcaagctgtctcctatatggaagctatatagctgtactactaaactcagtaataata-- |
418485 |
T |
|
| Q |
107 |
acttacatatcaacctgcagatgctctctatcacatagtatagtatagtatagtacacaacaca |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
418484 |
--ttacatatcaacctgcagatgctctctatcacatagtatagtatagtatagtacacaacaca |
418423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University