View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13366_low_48 (Length: 225)

Name: NF13366_low_48
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13366_low_48
NF13366_low_48
[»] chr6 (1 HSPs)
chr6 (21-209)||(11725644-11725832)
[»] chr2 (5 HSPs)
chr2 (56-157)||(12313128-12313229)
chr2 (120-162)||(15977994-15978036)
chr2 (120-162)||(19629372-19629414)
chr2 (120-162)||(19826273-19826315)
chr2 (120-162)||(33941918-33941960)
[»] chr8 (2 HSPs)
chr8 (74-162)||(27754413-27754501)
chr8 (120-162)||(28769358-28769400)
[»] chr4 (1 HSPs)
chr4 (126-169)||(30338616-30338659)
[»] chr7 (1 HSPs)
chr7 (120-162)||(25596042-25596084)
[»] chr3 (3 HSPs)
chr3 (120-162)||(26542546-26542588)
chr3 (120-162)||(45535237-45535279)
chr3 (120-157)||(23808083-23808120)
[»] chr1 (1 HSPs)
chr1 (74-163)||(10199381-10199470)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 11725832 - 11725644
Alignment:
Q  21 aatgacaaataccatgttacacaaaccactaatattaagctcttgtgagagagtttgggagaacttattcaaacagtttatgatatgttcatnnnnnnnt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  11725832 aatgacaaataccatgttacacaaaccactaatattaagctcttgtgagagagtttgggagaacttattcaaacagtttatgatatgttcataaaaaaat 11725733  T
Q  121 ttcaacttattttcataaactctccaaaatagcttatcaaaaacagttttagccaatccaaaacaatttaaccttattttgagtctgtg 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11725732 ttcaacttattttcataaactctccaaaataacttatcaaaaacagttttagccaatacaaaacaatttaaccttattttgagtctgtg 11725644  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 12313128 - 12313229
Alignment:
Q  56 taagctcttgtgagagagtttgggagaacttattcaaacagtttatgatatgttcatnnnnnnntttcaacttattttcataaactctccaaaatagctt 155  Q
    ||||| |||||||||  ||||||||||| ||||  |||||| |||||  ||||||||       ||||| ||||||||||||| |||||||| |||||||    
T  12313128 taagcacttgtgagattgtttgggagaatttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctctccaagatagctt 12313227  T
Q  156 at 157  Q
    ||    
T  12313228 at 12313229  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 15978036 - 15977994
Alignment:
Q  120 tttcaacttattttcataaactctccaaaatagcttatcaaaa 162  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||    
T  15978036 tttcagcttattttcataatctctccaaaatagcttatgaaaa 15977994  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 19629414 - 19629372
Alignment:
Q  120 tttcaacttattttcataaactctccaaaatagcttatcaaaa 162  Q
    |||||||||||||||||||||||||||  ||||||||| ||||    
T  19629414 tttcaacttattttcataaactctccagtatagcttatgaaaa 19629372  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 19826315 - 19826273
Alignment:
Q  120 tttcaacttattttcataaactctccaaaatagcttatcaaaa 162  Q
    |||||||||||||||||||||||||||  ||||||||| ||||    
T  19826315 tttcaacttattttcataaactctccagtatagcttatgaaaa 19826273  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 33941960 - 33941918
Alignment:
Q  120 tttcaacttattttcataaactctccaaaatagcttatcaaaa 162  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||    
T  33941960 tttcaacttattatcataaactctccaagatagcttatgaaaa 33941918  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 27754501 - 27754413
Alignment:
Q  74 tttgggagaacttattcaaacagtttatgatatgttcatnnnnnnntttcaacttattttcataaactctccaaaatagcttatcaaaa 162  Q
    |||||||||||||||  ||||||||||||| ||| | ||        |||| ||||||||||||| |||||||||||||||||| ||||    
T  27754501 tttgggagaacttatgaaaacagtttatgacatgattataagttgcgttcagcttattttcataagctctccaaaatagcttatgaaaa 27754413  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 28769358 - 28769400
Alignment:
Q  120 tttcaacttattttcataaactctccaaaatagcttatcaaaa 162  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  28769358 tttcagcttatttccataaactctccaaaatagcttatgaaaa 28769400  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 30338616 - 30338659
Alignment:
Q  126 cttattttcataaactctccaaaatagcttatcaaaaacagttt 169  Q
    |||||||||||||||||||||| | ||||||| |||||||||||    
T  30338616 cttattttcataaactctccaagagagcttatgaaaaacagttt 30338659  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 25596084 - 25596042
Alignment:
Q  120 tttcaacttattttcataaactctccaaaatagcttatcaaaa 162  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||    
T  25596084 tttcaacttattttcataagctctccaagatagcttatgaaaa 25596042  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 26542588 - 26542546
Alignment:
Q  120 tttcaacttattttcataaactctccaaaatagcttatcaaaa 162  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||    
T  26542588 tttcaacttatttccataaactctccataatagcttatgaaaa 26542546  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 45535237 - 45535279
Alignment:
Q  120 tttcaacttattttcataaactctccaaaatagcttatcaaaa 162  Q
    |||||||||||||||||||||||||||  ||||||||| ||||    
T  45535237 tttcaacttattttcataaactctccagtatagcttatgaaaa 45535279  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 23808083 - 23808120
Alignment:
Q  120 tttcaacttattttcataaactctccaaaatagcttat 157  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  23808083 tttcatcttattttcataaactctccaagatagcttat 23808120  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 10199381 - 10199470
Alignment:
Q  74 tttgggagaacttattcaaacagtttatgatatgttcatnnnnnnntttcaacttattttcataaactctccaaaatagcttatcaaaaa 163  Q
    |||||||||||| ||  ||| || |||||| ||||||||       ||||| ||||||||||||| ||||| |||||||||||| |||||    
T  10199381 tttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaaa 10199470  T

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