View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13366_low_6 (Length: 682)
Name: NF13366_low_6
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 7411369 - 7410892
Alignment:
| Q |
20 |
ctacatcctctacatcttcaactcgctctctcttcttctcccttccttttctccccccatcccttacatcctcgcattcatcatcttctccatcggtttc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7411369 |
ctacatcctctacatcttcaactcgctctctctccttctcccttccttttctctccccatcccttacatcctcgcattcatcatcttctccatcggtttc |
7411270 |
T |
|
| Q |
120 |
gtcttcggtttcgagatatgttgcggtgctcgatcgaggaagtgtgagcggaaaggttgtaaagggttgaagaaagcgacggagtttgatttgaagatag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7411269 |
gtcttcggtttcgagatatgttgcggtgctcgatcgaggaagtgtgagcggaaaggttgtaaagggttgaagaaagcgacggagtttgatttgaagatag |
7411170 |
T |
|
| Q |
220 |
agagattagggttagggtttggtgaatatgagaaacttccttggaaaggtgggagtgaagggaatcctgattatgagtgtttgaggtctgagttaaggaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7411169 |
agagattagggttagggtttggtgaatatgagaaacttccttggaaaggtgggagtgaagggaatcctgattatgagtgtttgaggtctgagttaaggaa |
7411070 |
T |
|
| Q |
320 |
aatggctcctgttaatgggaaagctcttttgctttttagagctccttgtggttgtcctgttgctaagcttgaagcttctggtcctaagaaaggaaagcgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7411069 |
aatggctcctgttaatgggaaagctcttttgctttttagagctccttgtggttgtcctgttgctaagcttgaagcttctggtcctaagaaaggaaagcgt |
7410970 |
T |
|
| Q |
420 |
cagaaaaggttaggttttactcactcactcttagtctatatattgattcaatttgtctaatttgggaattatgatgct |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7410969 |
cagaaaaggttaggttttactcactcactcttagtctatatattgattcaatttgtctaatttgggaattatgatgct |
7410892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 581 - 668
Target Start/End: Complemental strand, 7410807 - 7410720
Alignment:
| Q |
581 |
attggtgtgaattagattttgaggatgttatgaaaagattaaatcgtagatcaaatctgattgtgtgaaattttagggttgatgatgt |
668 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7410807 |
attggtgtgaattagattttgaggatgttatggaaagattaaatcgtagatcaaatctgattgtgtgaaattttagggttgatgatgt |
7410720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University