View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13366_low_8 (Length: 578)
Name: NF13366_low_8
Description: NF13366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13366_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 69 - 459
Target Start/End: Original strand, 21143834 - 21144232
Alignment:
| Q |
69 |
aaaccatatttaactaaatagttagaataaaatgtcatgtggtgatgtaccnnnnnnnnnntatatgtcatgtggtgatgagttaaaagtagtttgaatc |
168 |
Q |
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| T |
21143834 |
aaaccatatttaactaaatagttagaataaaatgtcatgtggtgatgtatcaaaaaaaaa-tatatgtcatgtggtgatgagttaaaagtagtttgaatc |
21143932 |
T |
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| Q |
169 |
cgaaagcaatgcttatgttcgatgagatcctggtcaaaaggttgttgtaccgatttgttatgaataatatactttgctgttatataattttattagtcgg |
268 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21143933 |
cgaaagcaatgcttatgttcgatgagatccaggtcaaaaggttgttgtaccgatttgttatgaataatatactttgctgttatataattttattagtcgg |
21144032 |
T |
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| Q |
269 |
tagtgatattttcaatgtgactatatagatcttaaggaaccataacattgtactacaagtaacatattacacgtcatgcacatataatgatataatcatt |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21144033 |
tagtgatattttcaatgtgactatatagatcttaaggaaccataacattgtactacaagtaacatattacacgtcatgcacatataatcatataatcatt |
21144132 |
T |
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| Q |
369 |
atatcatcat-------tctaata--tttacacaaatattaatagtggtttgaaattatatatttaaaatttgacttaattttgtggtcatgaattgaac |
459 |
Q |
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| T |
21144133 |
atatcatcattcatcaatctaatatgtttacacaaatattaatagtggtttgaaattatatatttaaaatttgacttaattttgtggtcatgaattgaac |
21144232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 21124191 - 21124242
Alignment:
| Q |
509 |
gaatcaagaaaaaataataaggatgccccagttgtggtatggttgactggag |
560 |
Q |
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| T |
21124191 |
gaatcaagaaaaaataataaggatgccccagttgtgatatggttgactggag |
21124242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 21144281 - 21144332
Alignment:
| Q |
509 |
gaatcaagaaaaaataataaggatgccccagttgtggtatggttgactggag |
560 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21144281 |
gaatcaagaaaaaataataaggatgccccagttgtgatatggttgactggag |
21144332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21143760 - 21143808
Alignment:
| Q |
1 |
ctgaatttgtcaaatgaagttaggaccatagtgacgatgtaaacagtga |
49 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21143760 |
ctgaatttgtgaaatgaagttaggaccatagtgacgatgtaaacagtga |
21143808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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