View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13367_high_1 (Length: 710)
Name: NF13367_high_1
Description: NF13367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13367_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 33 - 695
Target Start/End: Original strand, 29236123 - 29236786
Alignment:
| Q |
33 |
aggcaattaatagacttttggggaacttacttagaagctttgtgggaaataatttgaggcaatgggatcttattcttgcacatattgaatttgcctataa |
132 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29236123 |
aggcaattaatagacttttggggaacttacttagaagctttgtgggaaataatatgaggcaatgggatcttattcttgcacatattgaatttgcctataa |
29236222 |
T |
|
| Q |
133 |
taactctaccaatcaagctaccgggaaatgtccatttgaggtggtttatggcatgcgtcctcttagcccactggacttaactccatcacttagcactcaa |
232 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
29236223 |
taactccaccaatcaagctaccgggaaatgtccatttgaggtggtttatggcatgcgtcctctcagcccactggacttaactccatcacctagcactcaa |
29236322 |
T |
|
| Q |
233 |
caatatattgcagatgcggnnnnnnnnggccaatgaaatcaagaagttacatgaacaagttcgtgaaagatttgaa--caaaattcaaggtataagactt |
330 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||| |
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| T |
29236323 |
caatatattgcagatgcggaaaaaaa-ggccaatgaaatcaagaagttacatgaacaagttcgtgaaagatttgaaaacaaaattcagggaataagactt |
29236421 |
T |
|
| Q |
331 |
agcgagacaagccattcgttaaggttggtatttgagagtgcagggagccgagtacaattctggttggtattcttggatcctagataatcgcttgaaagat |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29236422 |
agcgagacaagccattcgttaaggttggtatttgagagtggaggaagccgagtaaaattctggttggtattcttggatcctagataatcgcttgaaagat |
29236521 |
T |
|
| Q |
431 |
atgttctcactacaaaaaggttaatggagaataaatggtttttaaattttgtatggaggatacaaatgtcacaatgggagtcagaatagttagaagagct |
530 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |
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|
| T |
29236522 |
atgttgtcactacaaaaaggttaatggagaataaatggtttttgaattttgtatggaggatacacatgtcacaatgggagtcataatagttagaagaact |
29236621 |
T |
|
| Q |
531 |
ttggaatactcttaagaaggccactctctctcatcaagttgaggatgatttgtggttcgtaaagagggaaaattctctgtgagatcactttcaatggcat |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
29236622 |
ttggaatactcttaagaaggccactctctctcatcaagttgaggatgatttgtggttcgtacagagggaaaattctttgtgagatcactttcaatggcat |
29236721 |
T |
|
| Q |
631 |
gttggaatggagctaaattttctggtacaaatcagccagtaccaacagtttggggggtatagcat |
695 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29236722 |
gttggaatggagctaaattttctggtacaaatcagccagtaccaacagtttggggggtatagcat |
29236786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 45166284 - 45166591
Alignment:
| Q |
35 |
gcaattaatagacttttggggaacttacttagaagctttgtgggaaataatttgaggcaatgggatcttattcttgcacatattgaatttgcctataata |
134 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
45166284 |
gcaattaatagacttctggggaacttactaagaagttttgtgggaaagaatttgaggcaatgggatcttatccttgcacatattgagtttgcctataata |
45166383 |
T |
|
| Q |
135 |
actctaccaatcaagctaccgggaaatgtccatttgaggtggtttatggcatgcgtcctcttagcccactggacttaactccatcacttagcactcaaca |
234 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| || |
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|
| T |
45166384 |
actccgccaatcaagctaccgggaagtgtccatttgaggtggtttatggcttgcgtcctcttagcccactggatttaactccatcacctagcactcagca |
45166483 |
T |
|
| Q |
235 |
atatattgcagatgcggnnnnnnnnggccaatgaaatcaagaagttacatgaacaagttcgtgaaagatttg---aacaaaattcaaggtataagactta |
331 |
Q |
| |
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|| | |||||| |||| ||||||||||||||||||||| |||||||| ||||||| |||| ||| ||||||||||||||||||||||| | |
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| T |
45166484 |
gtaaagtgcagacgcgg-aacaaagggccaatgaaatcaagaagttgcatgaacaggttcgtggaagaattgaaaaacaaaattcaaggtataagactca |
45166582 |
T |
|
| Q |
332 |
gcgagacaa |
340 |
Q |
| |
|
||||||||| |
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|
| T |
45166583 |
gcgagacaa |
45166591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 4e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 33 - 342
Target Start/End: Original strand, 8534828 - 8535138
Alignment:
| Q |
33 |
aggcaattaatagacttttggggaacttacttagaagctttgtgggaaataatttgaggcaatgggatcttattcttgcacatattgaatttgcctataa |
132 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||| ||| | ||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||| |
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|
| T |
8534828 |
aggcaattaata-acttttgggtaacttacttagaagcattgatgtaaataatttgaggaaatggaatcttatccttgcacatattgaattttcctataa |
8534926 |
T |
|
| Q |
133 |
taactctaccaatcaagctaccgggaaatgtccatttgaggtggtttatggcatgcgtcctcttagcccactggacttaactccatcacttagcactcaa |
232 |
Q |
| |
|
|||||||| || |||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| |
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|
| T |
8534927 |
taactctaggaaacaagctaccgggaagtttccatttgaggtggtttatggcatgcgtcctcttagcccattggacttaactctatcacctagcactccg |
8535026 |
T |
|
| Q |
233 |
caatatattgcagatgcggnnnnnnnnggccaatgaaatcaagaagttacatgaacaagttcgtgaaagatttgaa---caaaattcaaggtataagact |
329 |
Q |
| |
|
|| || | |||||||| || || |||| ||||||||||||| |||||||||||| ||||| || ||||| ||||||||||||||||||||| |
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|
| T |
8535027 |
cagtacagtgcagatgtgg-aacaaagggtcaataaaatcaagaagttgcatgaacaagtttgtgaatgaattgaaaagcaaaattcaaggtataagact |
8535125 |
T |
|
| Q |
330 |
tagcgagacaagc |
342 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8535126 |
cagcgagacaagc |
8535138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 20380700 - 20380737
Alignment:
| Q |
161 |
tgtccatttgaggtggtttatggcatgcgtcctcttag |
198 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
20380700 |
tgtccatttgaggtggtttatggcatgtgtccccttag |
20380737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 111 - 342
Target Start/End: Complemental strand, 2404721 - 2404488
Alignment:
| Q |
111 |
cacatattgaatttgcctataataactctaccaatcaagctaccgggaaatgtccatttgaggtggtttatggcatgcgtcctcttagcccactggactt |
210 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| || |
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|
| T |
2404721 |
cacagattgagtttgcctataataactccaccaatcaagctaccgggaagtgtccatttgaggtggtttatggcttgcgtcctcttagcccattggattt |
2404622 |
T |
|
| Q |
211 |
aactccatcacttagcactcaacaatatattgcagatgcggnnnnnnnnggccaatgaaatcaagaagttacatgaacaagttcgtgaaagatttg---a |
307 |
Q |
| |
|
||||||||||| ||||||||| || || | | |||| |||| ||||||||||||||||||| | |||||||||||||||| |||| ||| | |
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|
| T |
2404621 |
aactccatcacctagcactcagcagtacagtacagacgcgg-aacaaagggccaatgaaatcaagaagatgcatgaacaagttcgtggaagaattgaaaa |
2404523 |
T |
|
| Q |
308 |
acaaaattcaaggtataagacttagcgagacaagc |
342 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||| |
|
|
| T |
2404522 |
acagaattcaaggtataagactcagcgagacaagc |
2404488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 2405965 - 2405881
Alignment:
| Q |
30 |
cataggcaattaatagacttttggggaacttacttagaagctttgtgggaaataatttgaggcaatgggatcttattcttgcaca |
114 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
2405965 |
cataagcaattaatagacttctagggaacttacttagaagttttttgggaaagaatttgaggtaatgggatcttatccttgcaca |
2405881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 25481590 - 25481506
Alignment:
| Q |
92 |
caatgggatcttattcttgcacatattgaatttgcctataataactctaccaatcaagctaccgggaaatgtccatttgaggtgg |
176 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| || |||||||| || ||||||||||| || |||||||| ||||| |||| |
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|
| T |
25481590 |
caatgggatcttatttttgcacaagttgaatttgcatacaataactcaactaatcaagctactggaaaatgtccttttgaagtgg |
25481506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 13166282 - 13166360
Alignment:
| Q |
96 |
gggatcttattcttgcacatattgaatttgcctataataactctaccaatcaagctaccgggaaatgtccatttgaggt |
174 |
Q |
| |
|
|||||||||| | ||||| |||||||||| || ||||| || || |||||||||||||| |||||||| |||||||| |
|
|
| T |
13166282 |
gggatcttatattggcacaagttgaatttgcttacaataattcaactaatcaagctaccggaaaatgtccttttgaggt |
13166360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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