View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13367_high_3 (Length: 459)
Name: NF13367_high_3
Description: NF13367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13367_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 37 - 351
Target Start/End: Original strand, 35085421 - 35085735
Alignment:
| Q |
37 |
cgatgaaaatcgcatgaattttacaataatgctacaacatgattaaagagagatagagatacttgagaaaagcagcttatcgtacctgtttctgtttgtg |
136 |
Q |
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| T |
35085421 |
cgatgaaaatcgcatgaattttacaataatgctacaacatgattaaagagagatagagatacttgagaaaagcagcttatcgtacctgtttctgtttgtg |
35085520 |
T |
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| Q |
137 |
atgatgaacgacagcttcgctaggtttggtttggatgaaaacaataccgtgactgtgatgatggggagttatagatttatttatagtctccagaatttct |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35085521 |
atgatgaacgacagcttcgctaggtttggtttggatgaaaacaataccgtgactgtgatgatggggagatatagatttatttatagtctccagaatttct |
35085620 |
T |
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| Q |
237 |
tgtttattctaactgggcctccttttgtgtttgcttttcaccacgccttttgtgatatatatagctctcctatcctatgtttatcttcatattttgcaat |
336 |
Q |
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| T |
35085621 |
tgtttattctaactgggcctccttttgtgtttgcttttcaccacgccttttgtgatatatatagctctcctatcctatgtttatcttcatattttgcaat |
35085720 |
T |
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| Q |
337 |
tggagtattttctat |
351 |
Q |
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| T |
35085721 |
tggagtactttctat |
35085735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 35100753 - 35100889
Alignment:
| Q |
82 |
aagagagata-gagatacttgagaaaagcagcttatcgtacctgtttctgtttgtgatgatgaacgacagcttcgctaggtttggtttggatgaaaacaa |
180 |
Q |
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| T |
35100753 |
aagagagataagagatacttgagaaaagcagcttatcgtacctgtttctgtttg--atgatgaacgacgtcttgact-----tggtttggatgaaaacaa |
35100845 |
T |
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| Q |
181 |
taccgtgactgtgatgatggggagttatagatttatttatagtc |
224 |
Q |
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| T |
35100846 |
taccgtgactgtgatgatggggagttatagatttatttatagtc |
35100889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 35086165 - 35086238
Alignment:
| Q |
370 |
tattcattccaataactaaaataaactcaataagttagtcgaggcaaatacatccatgtattagagcaattaat |
443 |
Q |
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| T |
35086165 |
tattcattccaataactaatataaactcaataagttattcgaggcaaatacatccatgtattagagcaattaat |
35086238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 35074662 - 35074735
Alignment:
| Q |
163 |
tggtttggatgaaaacaata---ccgtgactgtgatgatggggagttatagatttatttatagtctccagaatt |
233 |
Q |
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| T |
35074662 |
tggtttggatgaaaacaatattaccgtgactctgatgatggggatttatagatttatttatagtcgccacaatt |
35074735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 42795396 - 42795274
Alignment:
| Q |
82 |
aagagagatagagatacttgagaaa----agcagcttatcgtacctgtttctgtttgtgatgatgaacgacagcttcgctaggtttggtttggatgaaa- |
176 |
Q |
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| T |
42795396 |
aagagagatagagataattgataaagtaaagtagcttatcgcacctgtttctgtttgtgacgatgaacgacggcttagc-----ttggtttggatgaaaa |
42795302 |
T |
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| Q |
177 |
-acaataccgtgactgtgatgatgggga |
203 |
Q |
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||||||| |||||||||||||| |||| |
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| T |
42795301 |
tacaatactgtgactgtgatgattggga |
42795274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 35074018 - 35074071
Alignment:
| Q |
82 |
aagagagata-gagatacttgagaaaagcagcttatcgtacctgtttctgtttg |
134 |
Q |
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| T |
35074018 |
aagagagataagagatacttgagaaaagcagcttattgtacctgtttctgtttg |
35074071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 35100691 - 35100728
Alignment:
| Q |
42 |
aaaatcgcatgaattttacaataatgctacaacatgat |
79 |
Q |
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| T |
35100691 |
aaaatcgcatgaattttacaataatgctacaacatgat |
35100728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 43026795 - 43026760
Alignment:
| Q |
118 |
gtacctgtttctgtttgtgatgatgaacgacagctt |
153 |
Q |
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| T |
43026795 |
gtacctgtttctgtttgtgatgatgaacgacggctt |
43026760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 345
Target Start/End: Original strand, 35103383 - 35103413
Alignment:
| Q |
315 |
gtttatcttcatattttgcaattggagtatt |
345 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35103383 |
gtttatcttcatattttgcaattggagtatt |
35103413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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